Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MY9_RS17865 Genome accession   NC_017743
Coordinates   3516493..3517182 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. JS     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3511493..3522182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS17830 (MY9_3591) flgN 3511673..3512155 (-) 483 WP_014665556.1 flagellar protein FlgN -
  MY9_RS17835 (MY9_3592) flgM 3512170..3512436 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  MY9_RS17840 (MY9_3593) - 3512517..3512936 (-) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  MY9_RS17845 comFC 3513010..3513732 (-) 723 WP_041521429.1 ComF family protein Machinery gene
  MY9_RS17850 (MY9_3595) comFB 3513696..3513992 (-) 297 WP_014665560.1 late competence protein ComFB -
  MY9_RS17855 (MY9_3596) comFA 3514061..3515443 (-) 1383 WP_014665561.1 ATP-dependent helicase ComFA Machinery gene
  MY9_RS17860 (MY9_3597) - 3515550..3516395 (-) 846 WP_014665562.1 DegV family protein -
  MY9_RS17865 (MY9_3598) degU 3516493..3517182 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MY9_RS17870 (MY9_3599) degS 3517265..3518422 (-) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator
  MY9_RS17875 (MY9_3600) - 3518639..3519292 (+) 654 WP_014665564.1 YigZ family protein -
  MY9_RS17880 (MY9_3601) tagV 3519292..3520467 (+) 1176 WP_014665565.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  MY9_RS17885 (MY9_3602) - 3520539..3521615 (-) 1077 WP_014665566.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=50640 MY9_RS17865 WP_003219701.1 3516493..3517182(-) (degU) [Bacillus sp. JS]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=50640 MY9_RS17865 WP_003219701.1 3516493..3517182(-) (degU) [Bacillus sp. JS]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTTGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCTAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGCTCTTACCTTCATCCGAAGGTTACGCATA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAACACGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTCTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTGAGCAATATTTTACAAAAAATGAATGTGAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment