Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I2433_RS05195 Genome accession   NZ_CP065056
Coordinates   1068477..1069322 (-) Length   281 a.a.
NCBI ID   WP_043040558.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1066993..1068390 1068477..1069322 flank 87


Gene organization within MGE regions


Location: 1066993..1069322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS05190 (JDBNIEOD_01038) - 1066993..1068390 (+) 1398 WP_115266604.1 ISNCY-like element ISSeq2 family transposase -
  I2433_RS05195 (JDBNIEOD_01039) dprA 1068477..1069322 (-) 846 WP_043040558.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 31363.31 Da        Isoelectric Point: 9.0432

>NTDB_id=506371 I2433_RS05195 WP_043040558.1 1068477..1069322(-) (dprA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MNNFELYKLKKAGLTNLNILNLIDYQQRNNKSLSLRDIAVVSCCKNPVLFIETYKQLNVALLKKEFNQFPSLSILDKQYP
LALREIYNPPVLLFYQGDLSLLEKPKLAVVGSRESSEIGTRSVYKIIKELKNHFVIISGLARGIDTSAHLACLKAGGQTI
AVIGTGLDRYYPKENRQLQEFLSQRHLVLSEYGAGEAALSYHFPERNRIIAGLSRGVLVVEAKQRSGSLITCQLAMEEGR
DIFVVPDNILNGTSAGCLKLIKDGASCVTHGRDILSEYHYS

Nucleotide


Download         Length: 846 bp        

>NTDB_id=506371 I2433_RS05195 WP_043040558.1 1068477..1069322(-) (dprA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
ATGAATAATTTTGAACTTTATAAATTAAAAAAGGCTGGGCTAACTAATTTAAATATTCTTAACCTGATTGACTACCAGCA
GCGTAATAACAAGTCTCTATCCCTTAGAGATATAGCAGTGGTTTCTTGCTGCAAAAATCCAGTTTTATTTATTGAGACCT
ACAAGCAATTAAATGTCGCCTTGTTAAAAAAGGAATTCAATCAGTTTCCGAGCTTATCTATCCTAGATAAGCAATACCCA
TTGGCTCTGAGGGAAATCTACAATCCTCCTGTTTTACTCTTTTATCAAGGTGATTTAAGCCTGTTAGAAAAACCTAAGCT
GGCAGTCGTTGGCTCTAGAGAATCCAGTGAAATTGGGACGCGGTCTGTTTATAAAATCATTAAAGAGCTTAAGAATCACT
TTGTCATTATCAGCGGGCTTGCTAGAGGTATTGATACCAGTGCTCATCTCGCCTGCTTGAAAGCAGGGGGGCAAACCATA
GCTGTTATCGGTACCGGTCTAGATCGCTACTATCCAAAGGAAAATCGCCAGCTACAGGAGTTTTTATCTCAGCGTCATCT
TGTGCTCAGTGAATATGGGGCTGGAGAGGCCGCCTTGTCTTATCATTTCCCTGAAAGAAACCGTATTATCGCAGGTCTTA
GTCGAGGTGTCCTTGTTGTTGAGGCTAAGCAGCGCTCTGGCTCTTTGATTACCTGTCAGCTAGCTATGGAAGAGGGACGT
GATATTTTTGTCGTACCTGACAATATTCTTAATGGGACATCGGCGGGCTGTTTGAAGCTGATCAAAGATGGTGCCAGCTG
TGTCACTCATGGCAGAGACATTCTTTCAGAATACCACTATTCTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

69.286

99.644

0.69
  dprA/cilB/dalA Streptococcus mitis SK321

59.286

99.644

0.591
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus pneumoniae D39

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus pneumoniae R6

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

58.571

99.644

0.584
  dprA Lactococcus lactis subsp. cremoris KW2

56.584

100

0.566
  dprA Bacillus subtilis subsp. subtilis str. 168

42

88.968

0.374