Detailed information    

insolico Bioinformatically predicted

Overview

Name   pknB   Type   Regulator
Locus tag   I2433_RS02500 Genome accession   NZ_CP065056
Coordinates   491030..492925 (+) Length   631 a.a.
NCBI ID   WP_206152405.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   modulate the activity of ComDE; modulate the activity of VicKR (predicted from homology)   
Competence regulation

Genomic Context

Location: 486030..497925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS02485 (JDBNIEOD_00488) fmt 488008..488943 (+) 936 WP_111678387.1 methionyl-tRNA formyltransferase -
  I2433_RS02490 (JDBNIEOD_00489) rsmB 488933..490255 (+) 1323 WP_111678857.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  I2433_RS02495 (JDBNIEOD_00490) - 490293..491033 (+) 741 WP_111678385.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  I2433_RS02500 (JDBNIEOD_00491) pknB 491030..492925 (+) 1896 WP_206152405.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  I2433_RS02505 (JDBNIEOD_00492) liaF 493059..493751 (+) 693 WP_111678381.1 cell wall-active antibiotics response protein LiaF -
  I2433_RS02510 (JDBNIEOD_00493) - 493748..494752 (+) 1005 WP_111678379.1 sensor histidine kinase -
  I2433_RS02515 (JDBNIEOD_00494) - 494745..495386 (+) 642 WP_021321066.1 response regulator -
  I2433_RS02520 (JDBNIEOD_00495) - 495420..496820 (+) 1401 WP_206152406.1 Cof-type HAD-IIB family hydrolase -
  I2433_RS02525 (JDBNIEOD_00496) - 496820..497182 (+) 363 WP_012516140.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 631 a.a.        Molecular weight: 68627.85 Da        Isoelectric Point: 6.7876

>NTDB_id=506358 I2433_RS02500 WP_206152405.1 491030..492925(+) (pknB) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MIQIGKLFAGRYRILKSIGRGGMADVYLANDLILDNEDVAIKVLRTNYQTDQVAVARFQREARAMAELNHPNIVAIRDIG
EEDGQQFLVMEYVDGSDLKKYIQDHAPLSNNEVVRIMEEVLSAMTLAHQKGIVHRDLKPQNILLTKSGVVKVTDFGIAVA
FAETSLTQTNSMLGSVHYLSPEQARGSKATIQSDIYAMGIMLFEMLTGHIPYDGDSAVTIALQHFQKPLPSIIDENPNVP
QALENVVIRATAKKLSDRYRSTFEMSRDLMTALSYNRSRERKVVFNDVESTKPLPKVTPTPVTAPKVSNASQASAAADAR
LEQTSQMDTLQKPQKKKKNGRFLGTLLKILFSFFVVGVALFAYLVLTKPTTVKVPDVTGSSLNAAKQVLEEAGLKVGKVH
QIESDTVSEDQVVKTNPQAGSAKRKGSSVDLYLSIGNKGFEMENYKGQDYQDVMTSLTETYGVPKSKIKIERIVTNEYPE
NTVISQSPSAGEKFNPAGKFKITLSVAVGDTVIMPMVTEYSYADAVNTLTALGIDAARIKAYVPSSSSPTGFVQVSSPSS
KAIVSGQTPYYGTQISLSEKGDISLYLYPEETRASSSSSSSDTSAPNPSAGDTTDSSSHTELGQNDAVTTP

Nucleotide


Download         Length: 1896 bp        

>NTDB_id=506358 I2433_RS02500 WP_206152405.1 491030..492925(+) (pknB) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
ATGATTCAGATTGGCAAGCTATTTGCTGGTCGTTATCGCATTCTAAAATCTATAGGCCGCGGTGGTATGGCGGATGTTTA
TTTAGCAAACGATTTGATTCTGGATAATGAGGACGTTGCCATTAAGGTCTTGCGGACCAATTATCAAACAGATCAGGTTG
CTGTTGCGCGTTTTCAAAGAGAAGCGCGAGCCATGGCTGAATTAAATCACCCCAATATTGTTGCCATTCGGGATATAGGC
GAGGAAGACGGACAGCAATTTTTAGTAATGGAATACGTTGATGGCTCTGACTTGAAAAAATACATTCAGGATCATGCGCC
ATTATCCAACAATGAGGTGGTGAGAATCATGGAGGAGGTTCTTTCTGCCATGACTCTGGCCCATCAAAAAGGAATTGTCC
ACAGGGATTTAAAGCCTCAAAATATTCTTTTAACCAAATCAGGTGTTGTTAAGGTTACAGATTTTGGGATTGCTGTTGCC
TTTGCAGAGACCAGCCTAACCCAGACAAATTCTATGCTAGGAAGTGTGCATTACCTCTCACCTGAGCAAGCGCGTGGTTC
TAAAGCGACAATTCAAAGTGATATTTACGCGATGGGAATCATGCTCTTTGAAATGCTAACAGGGCATATTCCTTATGATG
GCGATAGCGCTGTGACGATTGCTCTGCAGCATTTTCAAAAGCCGCTGCCCTCTATCATTGATGAAAATCCTAATGTGCCT
CAAGCTTTGGAAAATGTTGTTATTCGGGCCACTGCCAAAAAGCTAAGTGACCGTTATCGCTCGACCTTTGAGATGAGCAG
GGATTTGATGACAGCCCTTAGTTATAATCGCAGTCGTGAGCGTAAGGTTGTTTTTAATGATGTCGAAAGCACAAAGCCCT
TGCCAAAGGTAACACCGACTCCTGTAACAGCACCTAAGGTATCAAATGCTAGTCAGGCATCTGCGGCAGCTGATGCTAGA
CTTGAGCAGACTAGCCAGATGGATACTCTGCAAAAGCCTCAAAAAAAGAAAAAAAATGGGCGTTTTCTAGGAACACTCTT
AAAAATCTTGTTTTCCTTTTTTGTTGTTGGTGTGGCTCTTTTTGCTTATTTGGTCTTGACCAAGCCAACTACGGTTAAGG
TTCCTGATGTGACAGGCTCTAGTCTCAATGCTGCCAAGCAGGTCTTGGAGGAGGCGGGACTAAAGGTCGGTAAGGTCCAT
CAGATTGAAAGTGACACAGTTAGTGAGGATCAGGTGGTTAAGACAAATCCTCAAGCTGGCTCAGCTAAGCGAAAAGGCTC
CAGCGTTGACCTTTACCTTTCGATCGGAAATAAAGGCTTTGAGATGGAAAATTATAAGGGACAGGATTATCAAGATGTGA
TGACCAGTCTGACTGAGACCTATGGTGTACCAAAGTCAAAAATCAAGATTGAGCGTATCGTGACAAATGAATACCCTGAA
AACACCGTTATTAGCCAGTCTCCAAGCGCGGGAGAAAAATTTAACCCAGCTGGTAAATTCAAGATTACTCTCAGTGTAGC
AGTGGGTGATACGGTCATCATGCCAATGGTAACTGAGTACAGCTATGCAGACGCAGTCAATACACTAACAGCCCTAGGAA
TTGATGCCGCAAGAATCAAGGCCTATGTACCAAGCTCCAGCTCTCCGACAGGCTTTGTGCAGGTGAGCTCCCCAAGCTCA
AAGGCGATTGTCAGTGGGCAGACACCGTATTATGGTACCCAGATTAGCCTTTCTGAAAAGGGTGATATTAGCCTCTACCT
CTACCCTGAGGAGACACGTGCATCAAGCAGCTCATCGAGCTCTGATACCTCGGCTCCTAATCCATCAGCTGGAGATACAA
CAGACTCAAGCAGTCATACCGAATTAGGTCAAAATGACGCTGTTACAACACCGTAA

Domains

Predicted by InterproScan.

PASTA domain (PASTA)

(372-434)

PASTA domain (PASTA)

(512-588)

PASTA domain (PASTA)

(441-506)

Protein kinase domain (Pkinase)

(12-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pknB Streptococcus mutans UA159

65.714

94.295

0.62
  stkP/pknB Streptococcus salivarius strain HSISS4

62.245

93.185

0.58
  stkP Streptococcus pneumoniae TIGR4

57.364

81.775

0.469
  stkP Streptococcus pneumoniae D39

56.977

81.775

0.466
  stkP Streptococcus pneumoniae R6

56.977

81.775

0.466
  stkP Streptococcus pneumoniae Rx1

56.783

81.775

0.464