Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   JGX27_RS04555 Genome accession   NZ_CP077423
Coordinates   869835..870317 (+) Length   160 a.a.
NCBI ID   WP_009853947.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 864835..875317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS04530 (JGX27_04530) - 865496..866284 (+) 789 WP_009853943.1 Nif3-like dinuclear metal center hexameric protein -
  JGX27_RS04535 (JGX27_04535) rfbA 866471..867340 (+) 870 WP_009853944.1 glucose-1-phosphate thymidylyltransferase RfbA -
  JGX27_RS04540 (JGX27_04540) - 867340..867933 (+) 594 WP_009853945.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  JGX27_RS04545 (JGX27_04545) rfbB 868106..869155 (+) 1050 WP_003064218.1 dTDP-glucose 4,6-dehydratase -
  JGX27_RS04550 (JGX27_04550) - 869293..869715 (+) 423 WP_043878546.1 HD domain-containing protein -
  JGX27_RS04555 (JGX27_04555) mutX 869835..870317 (+) 483 WP_009853947.1 8-oxo-dGTP diphosphatase Machinery gene
  JGX27_RS04560 (JGX27_04560) - 870410..871597 (+) 1188 WP_009853948.1 AI-2E family transporter -
  JGX27_RS04565 (JGX27_04565) - 871587..872822 (+) 1236 WP_009853949.1 tetratricopeptide repeat protein -
  JGX27_RS04570 (JGX27_04570) - 872806..872982 (+) 177 WP_009853950.1 hypothetical protein -
  JGX27_RS04575 (JGX27_04575) - 873104..873406 (+) 303 WP_009853951.1 helix-turn-helix transcriptional regulator -
  JGX27_RS04580 (JGX27_04580) - 873506..874693 (+) 1188 WP_009853952.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18782.02 Da        Isoelectric Point: 4.2866

>NTDB_id=506318 JGX27_RS04555 WP_009853947.1 869835..870317(+) (mutX) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MTKLATICYIDNGEALLLLHRNKKPNDVHEGKWISVGGKLEAGETPDECAKREIFEETHFTVKEMDFKGVITFPEFTPGH
DWYTYVFKVTDFEGELISDEESREGTLEWVPYDQVLSKPTWEGDYEIFKWILDDVPFFSAKFNYDDEQRLIDKSVTFYDK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=506318 JGX27_RS04555 WP_009853947.1 869835..870317(+) (mutX) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGACAAAATTAGCAACGATTTGTTATATTGATAATGGTGAAGCGCTTTTGCTTTTACATCGCAATAAGAAACCAAATGA
TGTTCACGAAGGAAAATGGATTTCTGTTGGTGGTAAGCTAGAAGCAGGCGAGACACCAGATGAATGTGCGAAACGTGAGA
TTTTCGAGGAAACGCATTTTACTGTTAAAGAAATGGATTTCAAGGGAGTGATTACGTTCCCAGAATTCACACCAGGGCAT
GATTGGTACACTTATGTTTTCAAGGTAACCGATTTTGAGGGAGAATTGATTTCTGATGAAGAGTCACGTGAAGGAACTTT
AGAGTGGGTGCCTTACGACCAAGTTCTATCAAAACCGACTTGGGAGGGTGACTACGAAATTTTTAAATGGATTTTGGATG
ATGTGCCATTCTTTTCAGCCAAATTTAATTATGACGACGAACAGCGCTTGATTGATAAAAGCGTGACATTTTATGATAAA
TGA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(4-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

69.811

99.375

0.694