Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I2432_RS05355 Genome accession   NZ_CP065054
Coordinates   1124260..1125105 (+) Length   281 a.a.
NCBI ID   WP_043983543.1    Uniprot ID   A0A380JPG7
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1125192..1126589 1124260..1125105 flank 87


Gene organization within MGE regions


Location: 1124260..1126589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2432_RS05355 (LJFMMFNO_01070) dprA 1124260..1125105 (+) 846 WP_043983543.1 DNA-processing protein DprA Machinery gene
  I2432_RS05360 (LJFMMFNO_01071) - 1125192..1126589 (-) 1398 WP_115250549.1 ISNCY-like element ISSeq2 family transposase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 31334.24 Da        Isoelectric Point: 8.8540

>NTDB_id=506305 I2432_RS05355 WP_043983543.1 1124260..1125105(+) (dprA) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
MNNFELYKLKKAGLTNLNILNLIDYQQRNNKSLSLRDMAVVSCCKNPVLFIETYKQLNVALLKKEFNQFPSLSILDKQYP
LALREIYNPPVLLFYQGDLSLLEKPKLAVVGSRESSEIGTRSVYKIVKELKNHFVIVSGLARGIDTSAHLACLKAGGQTI
AVIGTGLDRYYPKENHQLQEFLSQRHLVLSEYGAGEAALSYHFPERNRIIAGLSRGVLVVEAKQRSGSLITCQLAMEEGR
DIFVVPDNILNGTSAGCLKLIKDGASCVTHGRDILSEYHYS

Nucleotide


Download         Length: 846 bp        

>NTDB_id=506305 I2432_RS05355 WP_043983543.1 1124260..1125105(+) (dprA) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
ATGAATAATTTTGAACTTTATAAATTAAAAAAGGCTGGGCTAACTAATTTAAATATTCTTAACCTGATTGACTACCAGCA
GCGTAATAACAAGTCTCTATCCCTTAGAGATATGGCAGTGGTTTCTTGCTGCAAAAATCCAGTTTTATTTATTGAGACCT
ACAAGCAATTAAATGTCGCCTTGTTAAAAAAGGAATTCAACCAGTTTCCGAGCTTATCTATCCTAGATAAGCAATACCCA
TTGGCCTTGAGGGAAATCTATAATCCTCCTGTTTTACTCTTTTATCAAGGTGATTTAAGCCTGTTAGAAAAGCCTAAGCT
GGCAGTCGTTGGCTCTAGAGAATCCAGTGAAATTGGGACGCGGTCTGTTTACAAAATCGTCAAAGAGCTTAAGAATCACT
TTGTCATTGTAAGTGGACTTGCTAGAGGTATTGATACCAGTGCTCATCTCGCTTGCTTGAAAGCAGGTGGGCAAACTATA
GCTGTTATCGGGACTGGCCTAGATCGCTACTATCCAAAGGAAAATCACCAGCTACAGGAGTTTTTATCTCAGCGTCATCT
CGTGCTCAGTGAATATGGGGCTGGAGAGGCCGCCTTGTCTTATCATTTCCCTGAAAGAAACCGTATTATCGCAGGTCTTA
GTCGAGGTGTCCTTGTTGTTGAGGCTAAGCAGCGCTCTGGCTCTTTGATTACCTGTCAGCTAGCTATGGAAGAGGGACGT
GATATTTTTGTCGTACCTGACAATATTCTTAATGGGACATCAGCGGGCTGTTTGAAGCTGATCAAAGATGGTGCCAGCTG
TGTCACTCATGGCAGAGACATTCTTTCAGAATACCACTATTCTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JPG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

68.571

99.644

0.683
  dprA/cilB/dalA Streptococcus mitis SK321

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus pneumoniae D39

58.571

99.644

0.584
  dprA/cilB/dalA Streptococcus pneumoniae R6

58.571

99.644

0.584
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

58.571

99.644

0.584
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

58.571

99.644

0.584
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

58.214

99.644

0.58
  dprA Lactococcus lactis subsp. cremoris KW2

57.295

100

0.573
  dprA Bacillus subtilis subsp. subtilis str. 168

42.4

88.968

0.377