Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   I2432_RS02830 Genome accession   NZ_CP065054
Coordinates   578997..580364 (+) Length   455 a.a.
NCBI ID   WP_206156376.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ13     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 573997..585364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2432_RS02800 (LJFMMFNO_00561) - 574595..575488 (+) 894 WP_024273139.1 XRE family transcriptional regulator -
  I2432_RS02805 (LJFMMFNO_00563) - 575841..575981 (+) 141 WP_012515166.1 hypothetical protein -
  I2432_RS02810 (LJFMMFNO_00564) - 576094..576252 (+) 159 WP_021320463.1 hypothetical protein -
  I2432_RS02815 (LJFMMFNO_00565) - 576266..576412 (+) 147 WP_021320464.1 hypothetical protein -
  I2432_RS02820 (LJFMMFNO_00566) - 576435..576602 (+) 168 WP_012515168.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  I2432_RS02825 (LJFMMFNO_00567) comA 576829..578982 (+) 2154 WP_012515169.1 peptide cleavage/export ABC transporter ComA Regulator
  I2432_RS02830 (LJFMMFNO_00568) comB 578997..580364 (+) 1368 WP_206156376.1 bacteriocin secretion accessory protein Regulator
  I2432_RS02835 (LJFMMFNO_00569) - 580873..581109 (+) 237 WP_024273149.1 hypothetical protein -
  I2432_RS02840 (LJFMMFNO_00570) nrdF 581567..582580 (+) 1014 WP_012515172.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  I2432_RS02845 (LJFMMFNO_00571) nrdI 582582..582989 (+) 408 WP_206156919.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  I2432_RS02850 (LJFMMFNO_00572) nrdE 583036..585207 (+) 2172 WP_043030545.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50784.90 Da        Isoelectric Point: 5.3447

>NTDB_id=506293 I2432_RS02830 WP_206156376.1 578997..580364(+) (comB) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
MNNNILESAEFYNRRYHNFSSRIILPTLLLFLFGVFFLAFAKKEISIISTATVEPNIILSNIQSTSNNTILTNNLKDNKY
VKFGDLLIKYDSRKEGIQQETYQTQLNNLQIQKEQLELLKASIEAGNSQFPEKDNYGYYQTFIDYLNQINTLSANVNQQN
ENVSSQNTAASNQQVEIENAIKGLTSQISDYQSVRSAIQNGTVVDLDNRAYSIYRSYLTQTSSLVDNTDKTAVINQFVAQ
IDSQINQLESSVAGYRIQHAGSGVQQSYSSTLESQLASLKAQSITKVEQELSALSNQITELEGTNKLQKNTSSKTSIVAN
EDGVLHLNQEFIGANIVPSGTIFAQVYPEMKKGTVVKITGYLPSTEISSISIGDTARFSTKDDNGETLDLIVKLSSIDNA
ATKTKNGNYFKVESKLQLKEKEAQLLKYGLEGKFILITGTKSYLNYYIDKFIGEK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=506293 I2432_RS02830 WP_206156376.1 578997..580364(+) (comB) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
ATGAATAACAATATATTAGAAAGTGCGGAATTTTATAACCGTCGTTACCACAACTTTTCTAGTCGTATCATTCTACCTAC
TTTGCTGCTTTTCTTGTTTGGTGTTTTCTTCCTAGCATTTGCAAAGAAAGAAATTTCTATTATTTCAACTGCAACAGTTG
AACCAAATATAATTCTTTCCAATATTCAATCTACAAGTAATAATACAATATTAACCAATAATCTAAAAGATAATAAATAT
GTCAAATTTGGAGACTTATTGATAAAATATGATTCAAGAAAAGAAGGTATTCAACAAGAGACCTATCAAACTCAATTAAA
TAATTTACAAATCCAAAAAGAACAGTTAGAGCTATTAAAAGCAAGTATTGAAGCTGGAAACAGTCAATTTCCAGAAAAAG
ATAATTATGGATATTATCAAACATTTATTGACTACTTAAATCAGATAAACACCTTATCAGCCAATGTAAATCAGCAAAAT
GAAAATGTCTCTTCACAAAATACTGCAGCTAGCAATCAGCAAGTAGAAATTGAGAATGCCATCAAAGGTCTCACAAGTCA
AATTTCAGATTATCAATCTGTTCGCTCGGCGATTCAAAATGGAACAGTGGTAGATCTTGATAATCGGGCTTATTCTATCT
ATAGGAGTTATCTAACTCAAACATCGAGTTTGGTAGATAATACTGATAAAACCGCTGTTATTAATCAATTTGTTGCTCAA
ATTGATAGTCAGATCAATCAACTAGAGAGTAGTGTAGCTGGTTATCGGATTCAGCATGCTGGTTCAGGAGTGCAACAATC
TTACTCTTCAACTCTAGAGAGTCAACTGGCTTCCTTAAAAGCGCAAAGCATAACCAAAGTTGAGCAAGAGTTGTCTGCTT
TGTCGAATCAAATTACAGAATTAGAGGGAACAAATAAACTTCAGAAGAACACATCATCTAAGACCTCTATAGTTGCCAAT
GAAGATGGTGTGTTGCATCTTAATCAGGAATTTATTGGTGCAAATATTGTTCCTTCAGGAACAATATTTGCTCAAGTTTA
TCCAGAAATGAAAAAAGGAACTGTTGTAAAAATCACAGGTTATTTACCTTCGACGGAAATATCAAGTATTTCTATTGGAG
ATACAGCACGATTTTCCACGAAAGATGATAATGGCGAAACTCTTGATTTAATAGTTAAATTATCTAGTATTGACAATGCT
GCAACTAAAACAAAAAATGGGAATTATTTTAAAGTTGAATCTAAGTTACAGCTTAAAGAAAAAGAAGCTCAATTATTGAA
ATATGGGCTTGAGGGTAAATTTATTTTAATTACGGGAACAAAAAGTTACTTGAATTACTATATTGATAAATTTATCGGTG
AGAAGTAA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(317-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus pneumoniae Rx1

49.779

99.341

0.495
  comB Streptococcus pneumoniae D39

49.779

99.341

0.495
  comB Streptococcus pneumoniae R6

49.779

99.341

0.495
  comB Streptococcus pneumoniae TIGR4

48.894

99.341

0.486
  comB Streptococcus mitis NCTC 12261

48.673

99.341

0.484
  comB Streptococcus mitis SK321

48.451

99.341

0.481
  comB Streptococcus gordonii str. Challis substr. CH1

47.672

99.121

0.473