Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I2D83_RS04770 Genome accession   NZ_CP065044
Coordinates   1061213..1061743 (+) Length   176 a.a.
NCBI ID   WP_180778595.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain L6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1056213..1066743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2D83_RS04755 (I2D83_04755) - 1056399..1057256 (-) 858 WP_205947643.1 hypothetical protein -
  I2D83_RS04760 (I2D83_04760) - 1057698..1058117 (-) 420 WP_015841647.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I2D83_RS04765 (I2D83_04765) uvrA 1058134..1060968 (-) 2835 WP_180778596.1 excinuclease ABC subunit UvrA -
  I2D83_RS04770 (I2D83_04770) ssb 1061213..1061743 (+) 531 WP_180778595.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I2D83_RS04775 (I2D83_04775) - 1061992..1062210 (+) 219 WP_228483946.1 hypothetical protein -
  I2D83_RS04780 (I2D83_04780) - 1062399..1062857 (+) 459 WP_180778593.1 GNAT family N-acetyltransferase -
  I2D83_RS04785 (I2D83_04785) - 1062918..1063307 (+) 390 WP_241007271.1 hypothetical protein -
  I2D83_RS04790 (I2D83_04790) - 1063338..1064648 (-) 1311 WP_182101296.1 IS4 family transposase -
  I2D83_RS04795 (I2D83_04795) - 1064759..1065379 (-) 621 WP_015841553.1 TIGR04211 family SH3 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18799.79 Da        Isoelectric Point: 5.2456

>NTDB_id=506170 I2D83_RS04770 WP_180778595.1 1061213..1061743(+) (ssb) [Pectobacterium aroidearum strain L6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQNSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=506170 I2D83_RS04770 WP_180778595.1 1061213..1061743(+) (ssb) [Pectobacterium aroidearum strain L6]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACACTGGCGACTTCCGAATCCTGGCGTGATAAACAGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAACTGGCTGAAGTCGCGGGCGAATATCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGTCAGCAGCAAGGCGGCTGGGGAC
AACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCGGCACAGAACAGCGCTCCA
GCGCAAAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.773
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.608
  ssb Neisseria meningitidis MC58

46.893

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.893

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369