Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I2D83_RS01085 Genome accession   NZ_CP065044
Coordinates   252830..254356 (-) Length   508 a.a.
NCBI ID   WP_180779396.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain L6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 247830..259356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2D83_RS01060 (I2D83_01065) ytfR 247986..249506 (+) 1521 WP_205947390.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  I2D83_RS01065 (I2D83_01070) ytfT 249493..250503 (+) 1011 WP_205947391.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  I2D83_RS01070 (I2D83_01075) yjfF 250503..251465 (+) 963 WP_015842128.1 galactofuranose ABC transporter, permease protein YjfF -
  I2D83_RS01075 (I2D83_01080) hdfR 251487..252314 (-) 828 WP_015842127.1 HTH-type transcriptional regulator HdfR -
  I2D83_RS01080 (I2D83_01085) - 252435..252773 (+) 339 WP_014701822.1 DUF413 domain-containing protein -
  I2D83_RS01085 (I2D83_01090) comM 252830..254356 (-) 1527 WP_180779396.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I2D83_RS01090 (I2D83_01095) ilvL 254764..254862 (+) 99 WP_071531109.1 ilv operon leader peptide -
  I2D83_RS01095 (I2D83_01100) ilvG 255003..256649 (+) 1647 WP_205947392.1 acetolactate synthase 2 catalytic subunit -
  I2D83_RS01100 (I2D83_01105) ilvM 256707..256967 (+) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  I2D83_RS01105 (I2D83_01110) - 256994..257920 (+) 927 WP_015842124.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55412.99 Da        Isoelectric Point: 6.8238

>NTDB_id=506165 I2D83_RS01085 WP_180779396.1 252830..254356(-) (comM) [Pectobacterium aroidearum strain L6]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDIALAPQSEEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLIARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRK
SIERKHLAEALSYRSMDRLLIQLHRSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=506165 I2D83_RS01085 WP_180779396.1 252830..254356(-) (comM) [Pectobacterium aroidearum strain L6]
ATGTCATTGGCAGTTACCTATACTCGAGCAATGATTGGCGTACAAGCGCCGGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCCTAACGCTAGTTGGCTTACCAGAAACTACCGTTAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGACCTGCCGATTGCTCTGGCGATTCTGGCGGCATCAGAACAAATCGATGGGGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACGCTACGTGGCGTCAATGGCGCAATTCCCGCCGCACTGGAAGCCATAAAGTCAGGCC
GCCAGCTAATCCTGCCAGATGACAACAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGTTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGGGAAGAGGAGCTACTCAGTTGCTCCGATATCGCACTGGCTCCGCAGTCAGAAGA
AGATGCACTCGACCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCTGGCGGTCACA
ATCTGCTATTGCTGGGGCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCTATCAACAGCCTCATCAACATTGATGCCACCATGACGCGCTGGCGTGCCAGACC
GTTCAGAGCGCCTCACCATAGTTCTTCTATGGCCGCACTCGTGGGGGGAGGATCGTTGCCAAAACCCGGAGAAATCTCGC
TTGCTCACAACGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTCTGGATTCTCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGGACGCGCGCCAAAGTGTGCTACCCGGCACGCGTGCAGCTCGTCGCTGCAATGAA
TCCCAGCCCATCAGGCCACTATCAAGGCATCCATAACCGCTTACCCGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACGTCAT
CAGGGAGAGAGCAGCGCAACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGAGAAATAGAACAACACTGTGCGTTAGAAGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTCGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACAATCGCTGACCTCGGCGATCGAAAG
AGCATAGAGAGAAAACATCTTGCCGAAGCACTGAGCTATCGCAGTATGGATCGATTGCTCATCCAGCTCCACAGAAGTCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.032

99.606

0.638
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.699

98.622

0.5
  comM Legionella pneumophila strain ERS1305867

50.699

98.622

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.14

99.803

0.47