Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | MY9_RS12390 | Genome accession | NC_017743 |
| Coordinates | 2459208..2459543 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. JS | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2454208..2464543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MY9_RS12370 (MY9_2479) | gcvT | 2454799..2455887 (-) | 1089 | WP_014664583.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| MY9_RS12375 (MY9_2480) | - | 2456329..2458002 (+) | 1674 | WP_014664584.1 | SNF2-related protein | - |
| MY9_RS12380 (MY9_2481) | - | 2458023..2458817 (+) | 795 | WP_014664585.1 | YqhG family protein | - |
| MY9_RS12385 (MY9_2482) | sinI | 2459001..2459174 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| MY9_RS12390 (MY9_2483) | sinR | 2459208..2459543 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| MY9_RS12395 (MY9_2484) | tasA | 2459637..2460422 (-) | 786 | WP_014664586.1 | biofilm matrix protein TasA | - |
| MY9_RS12400 (MY9_2485) | - | 2460486..2461058 (-) | 573 | WP_014664587.1 | signal peptidase I | - |
| MY9_RS12405 (MY9_2486) | tapA | 2461042..2461797 (-) | 756 | WP_014664588.1 | amyloid fiber anchoring/assembly protein TapA | - |
| MY9_RS12410 (MY9_2487) | - | 2462069..2462395 (+) | 327 | WP_014664589.1 | YqzG/YhdC family protein | - |
| MY9_RS12415 (MY9_2488) | - | 2462436..2462615 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| MY9_RS12420 (MY9_2489) | comGG | 2462687..2463061 (-) | 375 | WP_014664590.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| MY9_RS12425 (MY9_2490) | comGF | 2463062..2463442 (-) | 381 | WP_014664591.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| MY9_RS12430 (MY9_2491) | comGE | 2463468..2463815 (-) | 348 | WP_014664592.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| MY9_RS12435 (MY9_2492) | comGD | 2463799..2464230 (-) | 432 | WP_014664593.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| MY9_RS12440 (MY9_2493) | comGC | 2464220..2464516 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=50612 MY9_RS12390 WP_003226345.1 2459208..2459543(+) (sinR) [Bacillus sp. JS]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=50612 MY9_RS12390 WP_003226345.1 2459208..2459543(+) (sinR) [Bacillus sp. JS]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |