Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SCI_RS03570 Genome accession   NC_022238
Coordinates   719553..721787 (+) Length   744 a.a.
NCBI ID   WP_020997729.1    Uniprot ID   U2XV40
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 714553..726787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS03540 (SCI_0704) - 715403..716034 (+) 632 Protein_690 cystathionine beta-lyase -
  SCI_RS03545 (SCI_0705) rnz 716045..716974 (+) 930 WP_020997726.1 ribonuclease Z -
  SCI_RS03550 (SCI_0706) - 717007..717615 (+) 609 WP_006267140.1 histidine phosphatase family protein -
  SCI_RS03555 (SCI_0707) - 717625..718380 (+) 756 WP_020997727.1 SDR family oxidoreductase -
  SCI_RS03560 (SCI_0708) - 718390..719121 (+) 732 WP_020997728.1 class I SAM-dependent methyltransferase -
  SCI_RS03565 - 719105..719454 (+) 350 Protein_695 GNAT family N-acetyltransferase -
  SCI_RS03570 (SCI_0709) recJ 719553..721787 (+) 2235 WP_020997729.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SCI_RS03575 (SCI_0710) - 721934..722728 (-) 795 WP_006267558.1 ABC-2 transporter permease -
  SCI_RS03580 (SCI_0711) - 722750..723445 (-) 696 WP_003069677.1 ABC transporter ATP-binding protein -
  SCI_RS03585 (SCI_0712) - 723449..723814 (-) 366 WP_003069676.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83638.82 Da        Isoelectric Point: 4.4450

>NTDB_id=50616 SCI_RS03570 WP_020997729.1 719553..721787(+) (recJ) [Streptococcus constellatus subsp. pharyngis C1050]
MITSKYDWQIATNFSDEDFIKKAKKLGLETSVANLVYQRGIQTEEALRDFLEPSLDQLYDPYELHDMDKAVTRIRQAIEN
DEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIDNQGISLFITVDNGVAGLEAIELAQ
SMGVDVIVTDHHSMPEILPDAYAIVHPEHPEADYPFKHLAGCGVAFKLATALLEEVQVELLDLVAIGTIADMVSLTGENR
ILVKYGLSVLKNTQRIGLQELFKIAGIQSDELNEETVGFQIAPRLNALGRLDDPNPAIELLTGFDEEEARDIALMINQKN
DERKEMVQHIYDEAKFMIDPKKPVQVLAGKCWNPGVLGIVAGRLLEELHQPIIVLNIENGLAKGSARSIEAVDIFEALDP
HRELFVAFGGHAGAAGMTLEVSRLEELSQVLEAYIEDNQVDLSTKNELFLDEELALPDLTLETLKNFEKLAPFGMDNKKP
IFYLKDFKVENVRTMGMGNAHLKLKISQASAVLEVVAFGLGELATEFSQTKNLELAVTLSVNKWNGQTSLQLMLMDARVD
GIQLFNIRGKNARLPENVPVLRFSGEIPDLKKSRAVVVYDLPEHLNQLKAIIQQGNFEAIYFKNEIVQPYYLTGFGTREQ
FAKLYKTIYQFPEFDIRYKLKELAAYLKIDSILLIKMIQIFEELGFVTIQDGVMQVNKNAEKKAIESSHIYQELKITVKE
QELMALGTVQEIYDYLIEKDECSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=50616 SCI_RS03570 WP_020997729.1 719553..721787(+) (recJ) [Streptococcus constellatus subsp. pharyngis C1050]
ATGATTACATCAAAATATGATTGGCAGATTGCCACAAATTTTTCAGATGAGGACTTTATTAAAAAAGCTAAAAAACTGGG
CTTGGAGACTTCGGTAGCTAATCTAGTCTACCAGAGAGGTATCCAGACAGAAGAAGCATTGCGAGACTTTCTAGAGCCTA
GTTTGGACCAGCTGTATGATCCTTATGAATTGCATGATATGGATAAGGCAGTGACGCGCATTCGTCAAGCGATTGAAAAT
GATGAACAAATCTTGATTTATGGAGATTACGATGCGGATGGAATGACTTCAGCTTCCATTGTTAAAGAAGCGTTAGAGCA
ACTTGGAGCAGAGTGTCAGGTCTATCTGCCCAATCGATTTACAGACGGTTATGGTCCTAACGCGAGCGTTTATAAGTATT
TTATTGATAATCAGGGTATTTCCCTCTTCATTACAGTGGATAATGGAGTTGCAGGATTGGAAGCTATTGAACTAGCTCAG
TCTATGGGAGTGGATGTGATTGTGACGGATCACCACTCTATGCCGGAAATACTTCCTGATGCTTATGCAATTGTTCACCC
GGAACATCCAGAAGCTGATTATCCTTTTAAGCACTTAGCTGGCTGCGGCGTGGCTTTTAAGCTAGCAACTGCCCTTTTAG
AGGAAGTTCAAGTAGAGTTGCTGGATTTAGTAGCTATTGGGACTATCGCAGATATGGTCAGCTTGACAGGGGAAAATCGG
ATTTTGGTCAAATATGGCTTGTCTGTTTTGAAAAACACCCAGCGCATCGGTTTGCAGGAACTTTTCAAAATAGCAGGTAT
ACAGTCTGACGAGCTGAACGAAGAAACAGTCGGTTTTCAAATAGCCCCTAGACTCAATGCTCTAGGTCGATTGGATGATC
CCAATCCTGCTATTGAACTTCTGACCGGCTTTGATGAAGAAGAAGCGCGTGACATTGCCCTGATGATTAATCAGAAAAAT
GACGAACGCAAGGAGATGGTGCAGCATATCTATGATGAAGCTAAGTTTATGATTGATCCTAAGAAGCCTGTTCAGGTTCT
AGCTGGCAAGTGTTGGAATCCAGGTGTTTTGGGAATTGTAGCAGGGCGACTTTTAGAAGAGTTACATCAGCCGATCATTG
TGCTGAATATTGAAAATGGTTTAGCCAAAGGTAGTGCTCGCAGCATTGAAGCAGTTGATATTTTTGAAGCTCTAGATCCT
CACCGAGAGTTATTTGTAGCTTTTGGTGGGCATGCAGGGGCAGCTGGCATGACCCTTGAAGTCAGTCGATTAGAAGAACT
CAGTCAGGTTTTGGAGGCTTATATTGAAGATAATCAAGTTGATTTGTCAACTAAGAATGAACTCTTTTTGGATGAAGAAT
TAGCTTTGCCAGATCTGACATTAGAGACCCTCAAAAACTTTGAAAAGTTAGCTCCTTTCGGCATGGACAATAAAAAGCCT
ATTTTCTATTTGAAAGATTTTAAGGTTGAAAATGTCCGCACTATGGGGATGGGGAATGCGCACCTTAAGCTGAAAATTTC
TCAGGCTAGTGCAGTTCTTGAAGTAGTGGCTTTTGGTCTAGGTGAGCTTGCGACAGAATTTTCCCAAACTAAAAATTTAG
AGTTAGCAGTGACTCTGTCGGTCAACAAATGGAATGGTCAGACTAGCCTCCAGCTTATGCTGATGGATGCGAGGGTCGAT
GGAATTCAGCTTTTTAATATCCGAGGTAAAAATGCTCGGTTGCCTGAAAATGTTCCTGTTTTACGTTTTTCAGGAGAAAT
TCCTGATTTGAAAAAGAGCAGAGCAGTTGTAGTGTATGACTTACCTGAGCACCTAAATCAGCTCAAAGCAATTATTCAAC
AGGGCAATTTTGAAGCAATTTACTTTAAAAATGAGATTGTTCAGCCCTATTATTTGACAGGTTTCGGAACAAGAGAGCAG
TTTGCTAAACTCTATAAAACGATTTATCAGTTTCCAGAGTTTGATATACGCTACAAATTGAAAGAACTAGCCGCTTATCT
CAAAATTGATTCCATCCTACTCATTAAGATGATTCAAATTTTTGAAGAGTTAGGCTTTGTGACGATTCAAGATGGGGTTA
TGCAGGTAAATAAAAACGCAGAAAAAAAAGCTATTGAAAGTAGCCATATTTATCAGGAGCTTAAAATAACTGTCAAGGAG
CAGGAACTTATGGCTCTAGGAACGGTACAGGAAATTTATGATTATCTGATAGAAAAAGATGAATGTTCAAACTAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-733)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-435)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2XV40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

75.541

99.462

0.751
  recJ Bacillus subtilis subsp. subtilis str. 168

38.491

100

0.405

Multiple sequence alignment