Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SCI_RS02325 Genome accession   NC_022238
Coordinates   453880..454545 (+) Length   221 a.a.
NCBI ID   WP_006267632.1    Uniprot ID   F9P4K7
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448880..459545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS10155 (SCI_0458) - 449810..450079 (-) 270 Protein_434 IS30 family transposase -
  SCI_RS10160 (SCI_0459) - 450184..450908 (-) 725 Protein_435 ISL3 family transposase -
  SCI_RS02310 (SCI_0460) cysK 450862..451791 (-) 930 WP_020997639.1 cysteine synthase A -
  SCI_RS02315 (SCI_0461) - 451890..452525 (-) 636 WP_003035211.1 YigZ family protein -
  SCI_RS02320 (SCI_0462) comFA/cflA 452582..453883 (+) 1302 WP_020997640.1 DEAD/DEAH box helicase Machinery gene
  SCI_RS02325 (SCI_0463) comFC/cflB 453880..454545 (+) 666 WP_006267632.1 ComF family protein Machinery gene
  SCI_RS02330 (SCI_0464) hpf 454624..455166 (+) 543 WP_006267638.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SCI_RS02335 (SCI_0465) rsmD 455363..455902 (+) 540 WP_020997641.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SCI_RS02340 (SCI_0466) coaD 455892..456389 (+) 498 WP_006267255.1 pantetheine-phosphate adenylyltransferase -
  SCI_RS02345 (SCI_0467) sepM 456370..457425 (+) 1056 WP_020997642.1 SepM family pheromone-processing serine protease Regulator
  SCI_RS02350 (SCI_0468) - 457712..458269 (+) 558 WP_006267391.1 YutD family protein -
  SCI_RS02355 (SCI_0469) rlmN 458303..459385 (+) 1083 WP_006269861.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25426.51 Da        Isoelectric Point: 7.3982

>NTDB_id=50598 SCI_RS02325 WP_006267632.1 453880..454545(+) (comFC/cflB) [Streptococcus constellatus subsp. pharyngis C1050]
MNNCLLCESLLDEKLTFCDLLTLKKPKAKACDACFEKFQRISAQHCPKCYRDGIDEICIDCDVWTKKGKEVCHKSCFVYN
EAMKNFFSQYKFQGDYALSSVFTEVLHQELKNYNDYTLVPIPVSVEKYQARGFNQVTAFLEGTKLQFKEILEKYDTIAQS
SKMREERLQSQQCFKVKDKVTLPAKILLIDDIYTTGATLQLAKDILVEAGVKEILTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=50598 SCI_RS02325 WP_006267632.1 453880..454545(+) (comFC/cflB) [Streptococcus constellatus subsp. pharyngis C1050]
ATGAATAACTGTCTGTTATGTGAAAGTCTACTTGATGAAAAGCTAACATTTTGTGATTTGCTGACTTTGAAGAAGCCCAA
AGCAAAAGCTTGTGATGCCTGTTTTGAAAAATTCCAGCGTATTTCAGCGCAACATTGCCCTAAGTGCTATCGTGACGGAA
TAGATGAAATCTGCATAGACTGTGATGTGTGGACAAAGAAAGGAAAAGAAGTTTGCCATAAGAGTTGTTTTGTCTATAAT
GAAGCTATGAAAAACTTCTTTAGTCAATATAAATTTCAAGGAGATTATGCTCTTTCTTCTGTATTTACTGAAGTTTTGCA
TCAAGAATTAAAAAATTATAACGATTATACACTCGTGCCAATTCCTGTGAGTGTAGAAAAGTATCAAGCAAGAGGGTTTA
ATCAAGTAACAGCTTTTCTTGAGGGTACAAAGTTGCAATTTAAGGAAATTTTAGAAAAATATGATACAATTGCTCAATCA
AGCAAGATGAGAGAGGAGCGATTGCAGAGCCAGCAGTGCTTTAAAGTAAAAGACAAGGTTACACTTCCAGCAAAAATTCT
TTTGATAGATGATATTTATACCACAGGAGCAACCTTACAACTTGCCAAAGATATTTTAGTGGAAGCGGGTGTGAAAGAAA
TTTTGACATTTTCATTAGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P4K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

47.706

98.643

0.471
  comFC/cflB Streptococcus pneumoniae TIGR4

47.248

98.643

0.466
  comFC/cflB Streptococcus mitis NCTC 12261

47.248

98.643

0.466
  comFC/cflB Streptococcus pneumoniae D39

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae Rx1

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae R6

46.789

98.643

0.462
  comFC Bacillus subtilis subsp. subtilis str. 168

35.242

100

0.362

Multiple sequence alignment