Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IYR97_RS21940 Genome accession   NZ_CP064943
Coordinates   4832521..4834011 (+) Length   496 a.a.
NCBI ID   WP_196110263.1    Uniprot ID   A0A7S9LH63
Organism   Pseudomonas fulva strain ZDHY316     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4827521..4839011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IYR97_RS21920 (IYR97_21920) - 4827905..4829236 (-) 1332 WP_023532646.1 ammonium transporter -
  IYR97_RS21925 (IYR97_21925) glnK 4829284..4829622 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  IYR97_RS21930 (IYR97_21930) - 4829986..4830243 (+) 258 WP_028686764.1 accessory factor UbiK family protein -
  IYR97_RS21935 (IYR97_21935) - 4830279..4832288 (-) 2010 WP_049695358.1 DUF4034 domain-containing protein -
  IYR97_RS21940 (IYR97_21940) comM 4832521..4834011 (+) 1491 WP_196110263.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IYR97_RS21945 (IYR97_21945) - 4834132..4834908 (+) 777 WP_196110264.1 alpha/beta fold hydrolase -
  IYR97_RS21950 (IYR97_21950) - 4834908..4835705 (+) 798 WP_059183535.1 SDR family NAD(P)-dependent oxidoreductase -
  IYR97_RS21955 (IYR97_21955) - 4835834..4836745 (+) 912 WP_196110265.1 LysR substrate-binding domain-containing protein -
  IYR97_RS21960 (IYR97_21960) - 4837031..4838872 (-) 1842 WP_196110266.1 amidohydrolase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52659.38 Da        Isoelectric Point: 7.7103

>NTDB_id=505722 IYR97_RS21940 WP_196110263.1 4832521..4834011(+) (comM) [Pseudomonas fulva strain ZDHY316]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPARRITQNLAPADLPKDGGR
YDLAIALGILAADAQVPVATLAELECLGELALSGALRPVQGVLPAALAAREAGRALVVPRENAEEASLASGLVVYAVGHL
LELVAHLNGQVPLAAYAANGLLLNPRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQISRYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
QSSADVALQVAHAREVQQRRQGCANAFLNLDGLRQHCSLAAPDQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCTAI
GRAHLAEALQYRPGSG

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=505722 IYR97_RS21940 WP_196110263.1 4832521..4834011(+) (comM) [Pseudomonas fulva strain ZDHY316]
ATGTCTTTAGCCCTTGTTCACAGCCGCGCCCAGGTAGGCGTGCAGGCCCCGGCCGTCAGCGTTGAAACCCACCTGGCCAA
TGGCTTGCCTCATCTCACACTGGTCGGCTTGCCCGAAACCACGGTCAAGGAAAGCAAGGACCGCGTGCGCAGTGCCATCG
TCAACAGTGGCCTGAACTACCCAGCCCGGCGCATCACGCAAAACCTCGCTCCGGCCGACCTGCCCAAGGACGGTGGCCGC
TACGACCTGGCCATCGCCCTGGGCATCCTGGCGGCCGATGCCCAGGTGCCCGTGGCCACCCTGGCCGAGCTCGAATGCCT
GGGCGAACTGGCACTGTCGGGCGCGTTGCGGCCGGTGCAGGGCGTCTTGCCCGCAGCGCTTGCCGCACGCGAGGCGGGGC
GGGCACTGGTAGTGCCCCGTGAAAATGCCGAGGAAGCCAGCCTTGCCAGTGGCCTGGTGGTGTATGCCGTAGGCCATCTA
TTGGAGCTGGTGGCCCACCTGAACGGACAGGTACCGCTAGCTGCCTATGCCGCCAATGGCTTGCTCCTGAACCCTCGCCC
CTATCCCGACCTGAGCGAGGTGCAGGGGCAACTGGCGGCCAAACGCGCGCTGCTACTGGCCGCTGCCGGGGCGCACAACC
TGCTTTTCACCGGGCCGCCAGGTACTGGCAAAACCTTGTTGGCCAGCCGCCTGCCGGGCCTGCTGCCACCGCTGGATGAG
CATGAAGCGCTGGAGGTCGCCGCCATCCAGTCGGTCAGCGGGCACACCCCGCTGAACAGCTGGCCACAACGGCCGTTTCG
CCACCCTCATCATTCCGCCTCCGGACCTGCGCTGGTGGGTGGCGGAAGCCGGCCGCAACCCGGGGAAATCACCTTGGCCC
ACCACGGGGTGCTGTTTCTGGACGAGTTGCCCGAATTCGAGCGCCGGGTACTGGAAGTGCTGCGTGAACCCCTGGAATCT
GGCGAGATCGTAATCGCCAGGGCGCGGGATAAAGTGCGCTTTCCCGCCCGCTTTCAGCTCGTCGCTGCCATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCTACAGGGCGATGCCGCTGCAGCACCGAGCAGATATCCCGTTATCGCAACAAACTGT
CAGGCCCGCTACTGGACCGGATCGACTTGCACCTGACCGTGGCGCGCGAGAGCACCACGCTCAACAACCAGCCTTGCGGG
CAAAGCAGCGCCGACGTCGCCCTTCAGGTCGCGCACGCCCGGGAGGTGCAACAACGTCGGCAAGGGTGCGCCAATGCATT
TCTCAACCTCGATGGCCTGCGCCAGCACTGTAGCTTGGCAGCACCTGATCAGGCTTGGTTGGAAGGCGCCTGTGAACGAT
TGACGCTGTCGCTGCGAGCAGCACACCGATTGCTCAAGGTCGCCAGAACACTGGCAGACCTCGAGGGATGCACGGCAATT
GGCCGGGCGCACCTGGCTGAGGCCCTGCAGTACCGTCCCGGGAGTGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S9LH63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio campbellii strain DS40M4

55.444

100

0.554
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Glaesserella parasuis strain SC1401

53.8

100

0.542
  comM Legionella pneumophila str. Paris

49.899

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.899

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.72

100

0.474