Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SII_RS06555 Genome accession   NC_022237
Coordinates   1347540..1348205 (-) Length   221 a.a.
NCBI ID   WP_003078227.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1342540..1353205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS06525 (SII_1286) rlmN 1342697..1343779 (-) 1083 WP_020998968.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SII_RS06530 (SII_1287) - 1343813..1344376 (-) 564 WP_004234076.1 YutD family protein -
  SII_RS06535 (SII_1288) sepM 1344658..1345713 (-) 1056 WP_003073620.1 SepM family pheromone-processing serine protease Regulator
  SII_RS06540 (SII_1289) coaD 1345694..1346191 (-) 498 WP_003078294.1 pantetheine-phosphate adenylyltransferase -
  SII_RS06545 (SII_1290) rsmD 1346181..1346720 (-) 540 WP_020998969.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SII_RS06550 (SII_1291) hpf 1346919..1347461 (-) 543 WP_003073626.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SII_RS06555 (SII_1292) comFC/cflB 1347540..1348205 (-) 666 WP_003078227.1 ComF family protein Machinery gene
  SII_RS06560 (SII_1293) comFA/cflA 1348202..1349503 (-) 1302 WP_020998970.1 DEAD/DEAH box helicase Machinery gene
  SII_RS06565 (SII_1294) - 1349560..1350195 (+) 636 WP_020998971.1 YigZ family protein -
  SII_RS06570 (SII_1295) cysK 1350294..1351223 (+) 930 WP_020998972.1 cysteine synthase A -
  SII_RS10300 - 1351428..1351703 (-) 276 Protein_1292 cell filamentation protein Fic -
  SII_RS06580 (SII_1296) - 1351915..1352061 (-) 147 WP_020998973.1 hypothetical protein -
  SII_RS10140 (SII_1297) - 1352143..1352304 (-) 162 WP_003070190.1 DUF6290 family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25392.34 Da        Isoelectric Point: 7.6869

>NTDB_id=50526 SII_RS06555 WP_003078227.1 1347540..1348205(-) (comFC/cflB) [Streptococcus intermedius C270]
MNVCVLCDNSLGEKLTFCDLLSLTKPKIRACDACFDKFQRISEQHCPKCYRDGTSEICVDCQVWLEKGKEVSHKSCFVYN
EAMKDFFSQYKFQGDYALYSVFTEILQKELKAYSDYTLVPIPVSSEKYQKRGFNQVTALLEGTKLPFREILEKYDTIAQS
SKTRKERLQSQQCFKLKDSVQPPTKVLLLDDIYTTGSTLQLAKEILVEAGVKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=50526 SII_RS06555 WP_003078227.1 1347540..1348205(-) (comFC/cflB) [Streptococcus intermedius C270]
ATGAATGTATGTGTTTTATGTGACAATTCTCTTGGCGAAAAACTGACATTTTGTGATTTATTGTCCTTGACTAAGCCAAA
AATAAGGGCTTGTGATGCCTGCTTTGACAAATTTCAGCGTATTTCAGAGCAGCATTGTCCTAAGTGTTATCGGGATGGAA
CAAGTGAAATCTGTGTAGATTGCCAAGTATGGCTGGAAAAAGGAAAAGAAGTTTCTCATAAAAGTTGTTTTGTTTATAAT
GAAGCTATGAAAGACTTCTTTAGTCAATATAAATTTCAAGGAGATTATGCTCTTTATTCTGTATTTACAGAGATTTTGCA
AAAAGAATTAAAAGCCTATAGCGATTATACACTTGTTCCTATTCCTGTAAGTAGTGAAAAGTACCAGAAGCGAGGCTTCA
ACCAAGTGACAGCTCTCCTTGAGGGGACAAAGTTGCCGTTTAGAGAAATTTTAGAAAAGTATGATACGATTGCTCAATCA
AGTAAGACAAGAAAGGAGCGTTTGCAAAGTCAGCAGTGTTTTAAACTGAAAGACAGTGTTCAGCCTCCGACAAAAGTTCT
TTTGCTAGATGACATTTATACGACTGGCTCAACCCTACAGTTAGCAAAGGAAATTTTAGTGGAAGCGGGAGTGAAAGAAA
TTATGACATTTTCATTGGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae TIGR4

47.248

98.643

0.466
  comFC/cflB Streptococcus mitis NCTC 12261

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae Rx1

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae D39

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae R6

46.789

98.643

0.462

Multiple sequence alignment