Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPSH112_RS00100 | Genome accession | NC_017741 |
| Coordinates | 13712..13975 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori Shi112 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 8712..18975
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSH112_RS00075 (HPSH112_00050) | groES | 9005..9361 (-) | 357 | WP_000671959.1 | co-chaperone GroES | - |
| HPSH112_RS00080 (HPSH112_00055) | dnaG | 9636..11315 (+) | 1680 | WP_000601511.1 | DNA primase | - |
| HPSH112_RS00085 (HPSH112_00060) | - | 11312..12364 (+) | 1053 | WP_000802571.1 | MnmA/TRMU family protein | - |
| HPSH112_RS00090 (HPSH112_00065) | - | 12456..13283 (+) | 828 | WP_001154896.1 | DUF5718 family protein | - |
| HPSH112_RS00095 (HPSH112_00070) | comB2 | 13431..13712 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| HPSH112_RS00100 (HPSH112_00075) | comB3 | 13712..13975 (+) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| HPSH112_RS00105 (HPSH112_00080) | comB4 | 13977..16340 (+) | 2364 | WP_000890504.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HPSH112_RS00110 (HPSH112_00085) | - | 16571..18001 (+) | 1431 | WP_195154951.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=50527 HPSH112_RS00100 WP_000584955.1 13712..13975(+) (comB3) [Helicobacter pylori Shi112]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=50527 HPSH112_RS00100 WP_000584955.1 13712..13975(+) (comB3) [Helicobacter pylori Shi112]
ATGATTATCCTGTCAGCGAGCGTGAAGAATCTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATCTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |