Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLDRC3_RS04480 Genome accession   NZ_CP064835
Coordinates   827289..828278 (+) Length   329 a.a.
NCBI ID   WP_153950915.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain DRC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 822289..833278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLDRC3_RS04460 (LLDRC3_0848) - 822365..823201 (-) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -
  LLDRC3_RS04465 (LLDRC3_0849) - 823508..824929 (+) 1422 WP_003130403.1 NCS2 family permease -
  LLDRC3_RS04470 (LLDRC3_0850) - 825144..825968 (+) 825 WP_023164441.1 alpha/beta hydrolase -
  LLDRC3_RS04475 (LLDRC3_0851) - 826130..827215 (+) 1086 WP_003130405.1 YdcF family protein -
  LLDRC3_RS04480 (LLDRC3_0852) coiA 827289..828278 (+) 990 WP_153950915.1 competence protein CoiA Machinery gene
  LLDRC3_RS04485 (LLDRC3_0853) pepF 828341..830146 (+) 1806 WP_031559511.1 oligoendopeptidase F Regulator
  LLDRC3_RS04490 (LLDRC3_0854) - 830149..830832 (+) 684 WP_010906108.1 O-methyltransferase -
  LLDRC3_RS04495 (LLDRC3_0855) - 830986..831912 (+) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39452.06 Da        Isoelectric Point: 8.7308

>NTDB_id=505092 LLDRC3_RS04480 WP_153950915.1 827289..828278(+) (coiA) [Lactococcus lactis subsp. lactis strain DRC3]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGVIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKIQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFLINFQQNSFKEVYSPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=505092 LLDRC3_RS04480 WP_153950915.1 827289..828278(+) (coiA) [Lactococcus lactis subsp. lactis strain DRC3]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGTAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAAATTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATTCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.847

99.088

0.742
  coiA Streptococcus pneumoniae TIGR4

42.857

97.872

0.419
  coiA Streptococcus pneumoniae Rx1

42.857

97.872

0.419
  coiA Streptococcus pneumoniae D39

42.857

97.872

0.419
  coiA Streptococcus pneumoniae R6

42.857

97.872

0.419
  coiA Streptococcus mitis NCTC 12261

42.633

96.96

0.413