Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LLDRC3_RS04485 Genome accession   NZ_CP064835
Coordinates   828341..830146 (+) Length   601 a.a.
NCBI ID   WP_031559511.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain DRC3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 823341..835146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLDRC3_RS04465 (LLDRC3_0849) - 823508..824929 (+) 1422 WP_003130403.1 NCS2 family permease -
  LLDRC3_RS04470 (LLDRC3_0850) - 825144..825968 (+) 825 WP_023164441.1 alpha/beta hydrolase -
  LLDRC3_RS04475 (LLDRC3_0851) - 826130..827215 (+) 1086 WP_003130405.1 YdcF family protein -
  LLDRC3_RS04480 (LLDRC3_0852) coiA 827289..828278 (+) 990 WP_153950915.1 competence protein CoiA Machinery gene
  LLDRC3_RS04485 (LLDRC3_0853) pepF 828341..830146 (+) 1806 WP_031559511.1 oligoendopeptidase F Regulator
  LLDRC3_RS04490 (LLDRC3_0854) - 830149..830832 (+) 684 WP_010906108.1 O-methyltransferase -
  LLDRC3_RS04495 (LLDRC3_0855) - 830986..831912 (+) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  LLDRC3_RS04500 (LLDRC3_0856) alaS 832178..834796 (+) 2619 WP_003130876.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69919.99 Da        Isoelectric Point: 5.1104

>NTDB_id=505093 LLDRC3_RS04485 WP_031559511.1 828341..830146(+) (pepF) [Lactococcus lactis subsp. lactis strain DRC3]
MAKNRNEIPEKLTWDLTTIYKTDKEWEAELTRIKSELSLVEETDPGHLLDSAESLLIITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKISKEVYNKWLGELKKLKNYDHMFERLFAKKAHILSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMIQLTHGNYSSLMESKNRGVRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNLKAQIRSYDSARQAALANNFVPEKVYDVLMEAIHQHLPLLHRYIELRKKILGITDLKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKGKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAVKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSTEDRQKYLEYLKAGSSAYP
LEVIAKAGVDMESTDYLDAAFELFENRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=505093 LLDRC3_RS04485 WP_031559511.1 828341..830146(+) (pepF) [Lactococcus lactis subsp. lactis strain DRC3]
ATGGCTAAGAACAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACGACAATTTATAAAACAGATAAAGAATGGGA
AGCAGAGCTAACTAGAATAAAAAGCGAACTTTCACTCGTTGAAGAGACAGACCCCGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGATAATTACCGAAAAAATGTTATCCATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GACCAAGATACCAGAGAGGCTAAGTATCAGGAGTATCAGTCAAAAGCAACAGCCCTCTATGTGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAGTTTTTGAAAATTTCAAAAGAAGTCTATAACAAATGGTTGGGGGAGCTTAAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGCCTTTTTGCAAAAAAAGCGCATATTCTTAGTCAAAAAGAGGAAAAGTTATTGGCTGCG
GCTGGTGAAATTTTTGAAAGTCCTTCAGAAACTTTTGAAATTTTTGATAATGCGGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGATTCAACTCACGCATGGAAATTACTCTTCCTTAATGGAAAGTAAGAATAGGGGAGTACGAAAAG
CAGCCTACAAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACTAATGTAAAAGTC
CATAATCTTAAAGCCCAAATCCGCTCTTATGATTCAGCCCGTCAAGCTGCTCTGGCTAATAATTTTGTTCCAGAAAAAGT
TTACGATGTTTTGATGGAGGCCATTCATCAACATTTGCCACTTTTACATCGTTATATTGAACTACGCAAGAAAATTTTAG
GAATTACTGATTTAAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGGAAAAGTTAAAGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTAA
ATTGGCAAGAAACGTTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACGCGTGAA
AACCAACCATATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACTACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAGGAGCGCTTCGCCCTTTTGAACCACTGGCTTGATAGTTTCCGTGGAACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGTGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGTCAAAGAAAATCCAGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAACTGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCCTCAGCTTATCCT
TTAGAAGTAATTGCCAAAGCTGGAGTTGATATGGAATCTACCGATTATTTAGATGCTGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.298

100

0.647