Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLDRC3_RS04160 Genome accession   NZ_CP064835
Coordinates   767742..769880 (+) Length   712 a.a.
NCBI ID   WP_302105011.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain DRC3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 762742..774880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLDRC3_RS04135 (LLDRC3_0784) - 763594..764157 (+) 564 WP_004255233.1 GNAT family N-acetyltransferase -
  LLDRC3_RS04140 (LLDRC3_0785) - 764261..764659 (+) 399 WP_004255236.1 hypothetical protein -
  LLDRC3_RS04145 (LLDRC3_0786) - 764764..765696 (+) 933 WP_004255238.1 ABC transporter ATP-binding protein -
  LLDRC3_RS04150 (LLDRC3_0787) - 765693..767054 (+) 1362 WP_021214597.1 ABC transporter permease -
  LLDRC3_RS04155 (LLDRC3_0788) comEA 767114..767761 (+) 648 WP_010906131.1 ComEA family DNA-binding protein Machinery gene
  LLDRC3_RS04160 (LLDRC3_0789) comEC 767742..769880 (+) 2139 WP_302105011.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LLDRC3_RS04165 (LLDRC3_0790) - 770236..771012 (+) 777 WP_063283279.1 alpha/beta hydrolase family protein -
  LLDRC3_RS04170 (LLDRC3_0791) - 771196..771411 (+) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  LLDRC3_RS04175 (LLDRC3_0792) atpB 771456..772169 (+) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LLDRC3_RS04180 (LLDRC3_0793) atpF 772184..772690 (+) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  LLDRC3_RS04185 (LLDRC3_0794) - 772692..773219 (+) 528 WP_063283278.1 F0F1 ATP synthase subunit delta -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 81531.72 Da        Isoelectric Point: 9.5654

>NTDB_id=505090 LLDRC3_RS04160 WP_302105011.1 767742..769880(+) (comEC) [Lactococcus lactis subsp. lactis strain DRC3]
MSCVLNKIPLIFLAYLSVILYFLIFNFNLICLILFIFSSLLALYRKYYLVIPFLLVMGSFFLVVKMDTIKNSENQPTTLS
KITMIPDTIQVNGDLLSFQGKERGQNYQVYETLKSKKEQKFYQNLSQNCQLSFTGNLQIPEKQRNFNGFDNQKYLASQNI
YRQITIDKINKIVLNDTFDLHVLRRKAIVWSQTHFPKPMNDYMTGLLFGFLSKDFNQIGDIYSSLGIIHLFALSGMQVNF
FIDWFRRIILRLGITREKLNIWQVPFSIFYAFMTGFSVSVLRALFQKNIRLNPLDNLAVTTFLLMIVSPKFLLTTGGQLT
LFYAFVISMINHKISELKGIRKLLTESSVISLSVLPLLILDFHIFQPFSILLTIGFGFLFDVILLPLLLGTFLLSLIGYN
FNINHIFQILEWLIHEVDLPLHYPLVLGNPRTIELLILFFLIGLLIDNLFKKRRQIIFAGLIVCSFFICKNPVYPSITAV
DIGQGDSIFLQDKFNKKTILIDTGGRLALPQESWQKPQSQTNAEKILIPYLESVGVSQIDQLILTHTDADHVGDFLNLAD
KIKIKEIWVSPGELTNNHFVEKLKKANIAIHISKVGDKIPIFDSALKVLSNGYTGKGDNNDSIVTYGNFYHTKFLFTGDL
EQEGEKELLKNYPKLKVDVLKVGHHGSKTSSNPDFIKEINPKLALISVGEKNRYGHPNQETLETLKKTKSEY

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=505090 LLDRC3_RS04160 WP_302105011.1 767742..769880(+) (comEC) [Lactococcus lactis subsp. lactis strain DRC3]
ATGAGTTGTGTTTTGAATAAAATTCCTTTGATATTTTTAGCTTATCTTTCTGTTATCTTGTATTTTTTAATCTTCAATTT
TAATTTAATTTGTCTCATTTTGTTCATTTTTTCAAGTTTACTTGCCTTATATAGAAAATATTATTTAGTCATCCCATTTT
TATTAGTTATGGGAAGTTTTTTCTTAGTAGTAAAAATGGATACGATTAAGAATAGTGAAAATCAGCCAACCACTCTTTCC
AAAATTACAATGATCCCCGACACTATCCAAGTTAATGGTGATTTATTAAGTTTTCAAGGAAAAGAAAGAGGCCAAAATTA
TCAAGTTTACGAGACTCTAAAAAGTAAAAAAGAACAAAAATTTTATCAAAATCTAAGTCAAAATTGTCAGCTGAGTTTCA
CAGGAAACCTTCAAATTCCAGAAAAACAAAGAAATTTTAATGGATTCGATAATCAAAAGTATTTAGCGAGTCAGAATATT
TATCGGCAAATTACGATTGATAAAATTAATAAAATAGTTTTAAACGACACTTTTGACCTCCATGTTTTAAGACGAAAAGC
AATTGTCTGGTCACAAACTCATTTTCCAAAGCCAATGAATGATTATATGACTGGCTTACTTTTTGGCTTTTTAAGTAAAG
ATTTTAATCAAATAGGAGACATTTACAGTTCATTAGGAATTATTCATCTTTTTGCCTTATCGGGAATGCAAGTTAATTTT
TTCATTGATTGGTTTCGTAGAATTATTCTTCGACTAGGAATAACGAGAGAAAAATTAAATATTTGGCAAGTTCCCTTTTC
AATTTTTTATGCATTTATGACAGGATTTTCGGTTTCAGTATTACGAGCTTTATTTCAAAAAAATATTCGTCTAAATCCTT
TAGATAACCTAGCAGTGACAACCTTTCTTCTGATGATTGTCAGTCCTAAATTTTTACTGACAACAGGAGGACAACTAACT
TTATTTTATGCTTTTGTCATTTCAATGATTAATCATAAAATTTCAGAACTAAAAGGAATAAGAAAATTACTGACAGAATC
ATCAGTGATTTCTTTGAGTGTTTTACCTTTACTCATTTTGGATTTTCATATCTTTCAGCCTTTTTCAATTTTACTGACGA
TTGGCTTTGGCTTTTTATTTGATGTAATCTTATTGCCTTTACTATTAGGAACTTTTCTCTTGTCTCTAATTGGCTATAAT
TTTAATATAAATCATATTTTTCAAATTCTAGAATGGCTAATTCATGAGGTTGATTTACCCTTACATTATCCTTTGGTTTT
AGGGAATCCCCGGACAATTGAATTATTAATCTTATTTTTCCTAATCGGTTTGTTAATTGATAATCTCTTTAAGAAAAGAA
GACAAATAATTTTTGCTGGCCTAATTGTTTGTAGTTTTTTTATTTGTAAAAATCCAGTTTACCCCAGTATCACAGCAGTT
GATATTGGCCAAGGGGATAGTATTTTTTTGCAAGATAAATTTAATAAAAAAACAATTTTGATTGATACAGGCGGACGATT
AGCCCTTCCGCAAGAAAGTTGGCAAAAACCTCAAAGTCAAACAAATGCCGAAAAAATACTCATTCCATATCTTGAATCTG
TTGGAGTAAGTCAAATCGACCAGCTCATTTTGACGCATACGGACGCTGACCATGTTGGAGATTTTTTGAATTTAGCTGAT
AAAATAAAAATAAAAGAAATTTGGGTTAGCCCCGGTGAACTGACAAATAATCATTTTGTAGAAAAATTGAAGAAAGCAAA
TATTGCGATTCACATCAGTAAAGTTGGAGATAAAATTCCAATCTTTGATAGTGCTTTAAAAGTTTTATCAAATGGTTATA
CAGGAAAAGGGGATAATAATGATTCTATCGTGACTTATGGAAATTTTTATCATACAAAATTTCTATTTACAGGGGATTTA
GAACAAGAAGGAGAAAAAGAACTGCTCAAGAATTATCCTAAATTGAAAGTTGATGTCTTAAAAGTAGGTCATCATGGCAG
TAAAACAAGTTCAAACCCTGACTTTATTAAAGAAATTAATCCCAAACTTGCCCTCATTTCGGTTGGAGAGAAAAATCGAT
ATGGACATCCCAATCAAGAAACTTTAGAAACATTAAAAAAAACCAAATCAGAATACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(206-446)

Domain of unknown function (DUF4131) (DUF4131)

(27-171)

Metallo-beta-lactamase superfamily (Lactamase_B)

(483-689)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

76.945

99.298

0.764
  comEC/celB Streptococcus mitis SK321

44.645

100

0.451
  comEC/celB Streptococcus mitis NCTC 12261

44.429

100

0.448
  comEC/celB Streptococcus pneumoniae TIGR4

43.733

100

0.441
  comEC/celB Streptococcus pneumoniae Rx1

43.593

100

0.44
  comEC/celB Streptococcus pneumoniae D39

43.593

100

0.44
  comEC/celB Streptococcus pneumoniae R6

43.593

100

0.44