Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IMX31_RS26090 Genome accession   NZ_CP064793
Coordinates   5026998..5027498 (+) Length   166 a.a.
NCBI ID   WP_013059914.1    Uniprot ID   A0A0B6A5N1
Organism   Priestia megaterium strain IGA-FME-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5021998..5032498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX31_RS26060 yyaC 5022309..5022929 (-) 621 WP_195781500.1 spore protease YyaC -
  IMX31_RS26065 - 5023016..5024029 (+) 1014 WP_195781501.1 hypothetical protein -
  IMX31_RS26070 - 5024097..5024990 (+) 894 WP_195781502.1 mechanosensitive ion channel family protein -
  IMX31_RS26075 - 5025005..5025202 (+) 198 WP_013059917.1 DUF951 domain-containing protein -
  IMX31_RS26080 ychF 5025373..5026473 (+) 1101 WP_013059916.1 redox-regulated ATPase YchF -
  IMX31_RS26085 rpsF 5026663..5026950 (+) 288 WP_013059915.1 30S ribosomal protein S6 -
  IMX31_RS26090 ssbA 5026998..5027498 (+) 501 WP_013059914.1 single-stranded DNA-binding protein Machinery gene
  IMX31_RS26095 rpsR 5027565..5027804 (+) 240 WP_013059913.1 30S ribosomal protein S18 -
  IMX31_RS26100 - 5027943..5028887 (+) 945 WP_195781503.1 YybS family protein -
  IMX31_RS26105 - 5028924..5030897 (+) 1974 WP_013059911.1 DHH family phosphoesterase -
  IMX31_RS26110 rplI 5030894..5031343 (+) 450 WP_013059910.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18132.76 Da        Isoelectric Point: 4.6529

>NTDB_id=504824 IMX31_RS26090 WP_013059914.1 5026998..5027498(+) (ssbA) [Priestia megaterium strain IGA-FME-1]
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=504824 IMX31_RS26090 WP_013059914.1 5026998..5027498(+) (ssbA) [Priestia megaterium strain IGA-FME-1]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCGAATTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGACGGTCGTCGCGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAATTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCA
GATGACGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6A5N1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.765
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.608
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Vibrio cholerae strain A1552

33.889

100

0.367
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367