Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IWH25_RS03585 Genome accession   NZ_CP064781
Coordinates   759241..760209 (-) Length   322 a.a.
NCBI ID   WP_203387988.1    Uniprot ID   A0A974Y4E4
Organism   Azospira restricta strain DSM 18626     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 737521..759234 759241..760209 flank 7


Gene organization within MGE regions


Location: 737521..760209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IWH25_RS03475 (IWH25_03470) - 738945..739835 (+) 891 WP_203387967.1 TniB family NTP-binding protein -
  IWH25_RS03480 (IWH25_03475) - 739793..740926 (+) 1134 WP_203387968.1 TniQ family protein -
  IWH25_RS03485 (IWH25_03480) - 741502..742362 (+) 861 WP_203387969.1 hypothetical protein -
  IWH25_RS03490 (IWH25_03485) - 742416..743723 (+) 1308 WP_203387970.1 hypothetical protein -
  IWH25_RS03495 (IWH25_03490) - 743745..744845 (-) 1101 WP_203387971.1 hypothetical protein -
  IWH25_RS03500 (IWH25_03495) - 744838..745506 (-) 669 WP_203387972.1 hypothetical protein -
  IWH25_RS03505 (IWH25_03500) - 745499..747505 (-) 2007 WP_203387973.1 hypothetical protein -
  IWH25_RS03510 (IWH25_03505) - 747805..748233 (+) 429 WP_203387974.1 helix-turn-helix domain-containing protein -
  IWH25_RS03515 (IWH25_03510) - 748248..748484 (-) 237 WP_203387975.1 hypothetical protein -
  IWH25_RS03520 (IWH25_03515) - 748607..749386 (-) 780 WP_203387976.1 metallophosphoesterase -
  IWH25_RS03525 (IWH25_03520) - 749383..749559 (-) 177 WP_203387977.1 hypothetical protein -
  IWH25_RS03530 (IWH25_03525) - 749588..749869 (-) 282 WP_203387978.1 DUF1778 domain-containing protein -
  IWH25_RS03535 (IWH25_03530) - 750192..750965 (+) 774 WP_203387979.1 hypothetical protein -
  IWH25_RS03540 (IWH25_03535) - 750985..751539 (+) 555 WP_203387980.1 hypothetical protein -
  IWH25_RS03545 (IWH25_03540) - 751666..751842 (+) 177 WP_203387981.1 YegP family protein -
  IWH25_RS03550 (IWH25_03545) - 752100..753155 (+) 1056 WP_203387982.1 DUF6765 family protein -
  IWH25_RS03555 (IWH25_03550) - 753192..753512 (+) 321 WP_203387983.1 hypothetical protein -
  IWH25_RS03560 (IWH25_03555) - 753850..755766 (-) 1917 WP_203387984.1 esterase/lipase family protein -
  IWH25_RS18980 - 755909..756391 (+) 483 Protein_708 transposase -
  IWH25_RS03580 (IWH25_03575) - 757438..759234 (-) 1797 WP_203387987.1 hypothetical protein -
  IWH25_RS03585 (IWH25_03580) comM 759241..760209 (-) 969 WP_203387988.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 32951.98 Da        Isoelectric Point: 7.9423

>NTDB_id=504697 IWH25_RS03585 WP_203387988.1 759241..760209(-) (comM) [Azospira restricta strain DSM 18626]
MPLAIVRSRGLDGLAAPAVAVEVHLAGGLPSVTLVGLPDTEVKEARDRVRAALVNSGFEFPARRITINLAPADLPKESGR
FDLPIALGILAASGQLPADRLDAHEFAGELSLSGELRPVRGALAMVLAADAGERSFVLPAASAAEAALARPAGVFAATGL
LAVCAHLRGESPLPAAAATPAAIADSYPDLADVRGQAQAKRALEIAAGGGHSLLLSGPPGSGKSMLAARLPGLLPPLADG
EALESAAVLSLAGQFRPAQYGRRNFRHPHHSASAVALVGGGCDLYKLLRHCRNSCDQLAETVTAVLNPLTPCRCKPSGRF
CV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=504697 IWH25_RS03585 WP_203387988.1 759241..760209(-) (comM) [Azospira restricta strain DSM 18626]
ATGCCGCTGGCCATCGTCCGCAGCCGGGGTCTCGACGGCCTCGCCGCGCCGGCGGTGGCGGTCGAGGTGCACCTCGCCGG
CGGCCTGCCGTCGGTGACGCTGGTCGGCCTGCCCGACACCGAAGTCAAGGAAGCGCGCGACCGCGTACGCGCTGCGCTGG
TCAATTCCGGCTTCGAATTCCCCGCCCGCCGCATCACGATCAACCTGGCGCCGGCCGACCTGCCCAAGGAGTCCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTCGCCGCCTCCGGCCAGCTGCCGGCCGACCGCCTCGACGCGCACGAATTCGC
CGGCGAACTGTCGCTGTCGGGCGAACTGCGCCCGGTACGCGGCGCGCTGGCGATGGTGCTCGCCGCCGACGCCGGCGAGC
GCAGCTTCGTGCTGCCGGCGGCGAGCGCCGCCGAAGCGGCGCTGGCACGCCCCGCCGGCGTCTTCGCCGCGACCGGCCTG
CTCGCCGTCTGCGCCCACCTGCGCGGCGAGTCGCCGCTGCCGGCAGCCGCGGCGACGCCGGCCGCGATCGCCGACAGCTA
CCCCGACCTGGCCGACGTGCGCGGCCAGGCGCAGGCCAAGCGCGCGCTCGAAATCGCCGCCGGCGGCGGCCATTCGCTGC
TGCTGTCCGGCCCGCCGGGCAGCGGCAAGTCGATGCTGGCGGCGCGCCTGCCCGGGCTGCTGCCGCCGCTCGCCGACGGC
GAGGCGCTGGAGTCGGCGGCGGTCCTCTCGCTCGCCGGACAGTTCCGCCCGGCGCAGTACGGCCGCAGAAATTTCCGCCA
TCCCCATCATTCGGCGTCGGCAGTGGCGCTGGTCGGCGGCGGCTGTGACTTATACAAATTATTGCGACATTGTAGAAATA
GCTGCGACCAACTTGCTGAGACTGTAACAGCAGTTCTGAACCCCCTGACGCCCTGCCGGTGTAAGCCGTCAGGGCGTTTT
TGCGTGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.282

88.199

0.488
  comM Glaesserella parasuis strain SC1401

54.355

89.13

0.484
  comM Vibrio campbellii strain DS40M4

54.577

88.199

0.481
  comM Haemophilus influenzae Rd KW20

52.431

89.441

0.469
  comM Legionella pneumophila str. Paris

51.579

88.509

0.457
  comM Legionella pneumophila strain ERS1305867

51.579

88.509

0.457
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.708

89.441

0.382