Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HPB14_RS00225 | Genome accession | NC_017733 |
| Coordinates | 39265..40401 (+) | Length | 378 a.a. |
| NCBI ID | WP_001045836.1 | Uniprot ID | - |
| Organism | Helicobacter pylori HUP-B14 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34265..45401
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPB14_RS00190 (HPB14_00165) | panD | 34668..35021 (+) | 354 | WP_000142235.1 | aspartate 1-decarboxylase | - |
| HPB14_RS00195 (HPB14_00170) | - | 35024..35326 (+) | 303 | WP_000347928.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPB14_RS00200 (HPB14_00175) | - | 35326..36321 (+) | 996 | WP_000468427.1 | PDZ domain-containing protein | - |
| HPB14_RS00205 (HPB14_00180) | comB6 | 36329..37384 (+) | 1056 | WP_000786655.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPB14_RS00210 (HPB14_00185) | comB7 | 37400..37513 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPB14_RS00215 (HPB14_00190) | comB8 | 37510..38253 (+) | 744 | WP_001208391.1 | type IV secretion system protein | Machinery gene |
| HPB14_RS00220 (HPB14_00195) | comB9 | 38253..39272 (+) | 1020 | WP_014658396.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPB14_RS00225 (HPB14_00200) | comB10 | 39265..40401 (+) | 1137 | WP_001045836.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPB14_RS00230 (HPB14_00205) | - | 40471..41883 (+) | 1413 | WP_000694865.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPB14_RS00235 (HPB14_00210) | gmd | 41925..43070 (+) | 1146 | WP_000659798.1 | GDP-mannose 4,6-dehydratase | - |
| HPB14_RS00240 (HPB14_00215) | - | 43063..43995 (+) | 933 | WP_001002510.1 | GDP-L-fucose synthase family protein | - |
| HPB14_RS08640 | - | 44023..44231 (-) | 209 | Protein_40 | anthranilate synthase component I | - |
| HPB14_RS08160 (HPB14_00220) | - | 44374..44658 (-) | 285 | WP_000466443.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42217.77 Da Isoelectric Point: 9.8253
>NTDB_id=50428 HPB14_RS00225 WP_001045836.1 39265..40401(+) (comB10) [Helicobacter pylori HUP-B14]
MNKWLKGAIVFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDSKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEITNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDSKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEITNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=50428 HPB14_RS00225 WP_001045836.1 39265..40401(+) (comB10) [Helicobacter pylori HUP-B14]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAATCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACTATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTCAAAAAC
AAATACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCAGCTTTAAACAACAGAGGCAATAAAGAAGAGATAACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTATTCATTTCGCCTAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CGGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAATCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACTATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTCAAAAAC
AAATACAACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCAGCTTTAAACAACAGAGGCAATAAAGAAGAGATAACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTATTCATTTCGCCTAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CGGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.09 |
100 |
0.971 |