Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | HPB14_RS00205 | Genome accession | NC_017733 |
| Coordinates | 36329..37384 (+) | Length | 351 a.a. |
| NCBI ID | WP_000786655.1 | Uniprot ID | - |
| Organism | Helicobacter pylori HUP-B14 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 31329..42384
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPB14_RS00175 (HPB14_00150) | - | 31734..32147 (+) | 414 | WP_001022998.1 | universal stress protein | - |
| HPB14_RS00180 (HPB14_00155) | - | 32178..32453 (+) | 276 | WP_000784923.1 | ATP-dependent Clp protease adaptor ClpS | - |
| HPB14_RS00185 (HPB14_00160) | - | 32453..34678 (+) | 2226 | WP_001051468.1 | AAA family ATPase | - |
| HPB14_RS00190 (HPB14_00165) | panD | 34668..35021 (+) | 354 | WP_000142235.1 | aspartate 1-decarboxylase | - |
| HPB14_RS00195 (HPB14_00170) | - | 35024..35326 (+) | 303 | WP_000347928.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPB14_RS00200 (HPB14_00175) | - | 35326..36321 (+) | 996 | WP_000468427.1 | PDZ domain-containing protein | - |
| HPB14_RS00205 (HPB14_00180) | comB6 | 36329..37384 (+) | 1056 | WP_000786655.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPB14_RS00210 (HPB14_00185) | comB7 | 37400..37513 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPB14_RS00215 (HPB14_00190) | comB8 | 37510..38253 (+) | 744 | WP_001208391.1 | type IV secretion system protein | Machinery gene |
| HPB14_RS00220 (HPB14_00195) | comB9 | 38253..39272 (+) | 1020 | WP_014658396.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPB14_RS00225 (HPB14_00200) | comB10 | 39265..40401 (+) | 1137 | WP_001045836.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPB14_RS00230 (HPB14_00205) | - | 40471..41883 (+) | 1413 | WP_000694865.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39753.70 Da Isoelectric Point: 9.0413
>NTDB_id=50424 HPB14_RS00205 WP_000786655.1 36329..37384(+) (comB6) [Helicobacter pylori HUP-B14]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSIVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSIVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=50424 HPB14_RS00205 WP_000786655.1 36329..37384(+) (comB6) [Helicobacter pylori HUP-B14]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCACTGTTTAATTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTGAGCATTTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACATGGAGGAGCATTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCAGTTACTAAGGCTTTGATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCACTGTTTAATTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTGAGCATTTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACATGGAGGAGCATTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCAGTTACTAAGGCTTTGATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
95.157 |
100 |
0.952 |