Detailed information NTG0050427

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPB14_RS00220
• Genome accession: NC_017733
• Coordinates: 38253..39272 (+)
• Length: 339 a.a.
• NCBI ID: WP_014658396.1
• Uniprot ID: -
• Organism: Helicobacter pylori HUP-B14
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33253..44272

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPB14_RS00190 (HPB14_00165)	panD	34668..35021 (+)	354	WP_000142235.1	aspartate 1-decarboxylase	-
HPB14_RS00195 (HPB14_00170)	-	35024..35326 (+)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
HPB14_RS00200 (HPB14_00175)	-	35326..36321 (+)	996	WP_000468427.1	PDZ domain-containing protein	-
HPB14_RS00205 (HPB14_00180)	comB6	36329..37384 (+)	1056	WP_000786655.1	P-type conjugative transfer protein TrbL	Machinery gene
HPB14_RS00210 (HPB14_00185)	comB7	37400..37513 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPB14_RS00215 (HPB14_00190)	comB8	37510..38253 (+)	744	WP_001208391.1	type IV secretion system protein	Machinery gene
HPB14_RS00220 (HPB14_00195)	comB9	38253..39272 (+)	1020	WP_014658396.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPB14_RS00225 (HPB14_00200)	comB10	39265..40401 (+)	1137	WP_001045836.1	DNA type IV secretion system protein ComB10	Machinery gene
HPB14_RS00230 (HPB14_00205)	-	40471..41883 (+)	1413	WP_000694865.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPB14_RS00235 (HPB14_00210)	gmd	41925..43070 (+)	1146	WP_000659798.1	GDP-mannose 4,6-dehydratase	-
HPB14_RS00240 (HPB14_00215)	-	43063..43995 (+)	933	WP_001002510.1	GDP-L-fucose synthase family protein	-
HPB14_RS08640	-	44023..44231 (-)	209	Protein_40	anthranilate synthase component I	-

Sequence

Protein

• Length: 339 a.a.
• Molecular weight: 39243.06 Da
• Isoelectric Point: 9.6855

>NTDB_id=50427 HPB14_RS00220 WP_014658396.1 38253..39272(+) (comB9) [Helicobacter pylori HUP-B14]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFIKPQKENKENKENKENKENKENKENTLENAPTNNKPLKEKKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKA
LKSSQRKWYCLGICSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWT
LRLGKDYLCIRFVKRGKDE

Nucleotide

• Length: 1020 bp

>NTDB_id=50427 HPB14_RS00220 WP_014658396.1 38253..39272(+) (comB9) [Helicobacter pylori HUP-B14]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACGGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAGAG
CAACGATCGTATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTTACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAGGATAAAAAC
TATTATTCTAACGCTTTTATCAAGCCCCAAAAAGAAAATAAAGAAAATAAAGAAAATAAAGAAAATAAAGAAAATAAAGA
AAATAAAGAAAATACTCTTGAAAACGCTCCCACAAACAACAAACCCTTAAAAGAAAAAAAAGAAGAAACCAAAGAAAAAG
AAGAAGAGACTATAACTATTGGCGATAACACCAATGCGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCT
TTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGAATTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTAAAGAAAT
CTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCG
TTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACT
TTAAGGCTAGGTAAGGACTATTTGTGCATCCGTTTTGTCAAAAGGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-330)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.824	100	0.941