Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KRG72_RS08880 Genome accession   NZ_CP076703
Coordinates   1792116..1792709 (-) Length   197 a.a.
NCBI ID   WP_074869549.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1787116..1797709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS08860 (KRG72_08860) recA 1787562..1788716 (-) 1155 WP_039696214.1 recombinase RecA Machinery gene
  KRG72_RS08865 (KRG72_08865) cinA 1788763..1790022 (-) 1260 WP_258255159.1 competence/damage-inducible protein A Machinery gene
  KRG72_RS08870 (KRG72_08870) - 1790151..1791332 (-) 1182 WP_258255160.1 MFS transporter -
  KRG72_RS08875 (KRG72_08875) - 1791535..1792086 (-) 552 WP_258255161.1 DNA-3-methyladenine glycosylase I -
  KRG72_RS08880 (KRG72_08880) ruvA 1792116..1792709 (-) 594 WP_074869549.1 Holliday junction branch migration protein RuvA Machinery gene
  KRG72_RS08885 (KRG72_08885) hexB 1792710..1794650 (-) 1941 WP_258255164.1 DNA mismatch repair endonuclease MutL Machinery gene
  KRG72_RS08890 (KRG72_08890) hexA 1794770..1797337 (-) 2568 WP_258255168.1 DNA mismatch repair protein MutS Machinery gene
  KRG72_RS08895 (KRG72_08895) - 1797324..1797677 (-) 354 WP_258255169.1 YlbF family regulator -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21754.20 Da        Isoelectric Point: 5.3500

>NTDB_id=504107 KRG72_RS08880 WP_074869549.1 1792116..1792709(-) (ruvA) [Streptococcus equinus strain S1]
MYDYIKGKLTKITAKYIVIEAGGLGYIVNVANPYSFSDLMNQDIQVYLHQVIREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENGKVSQTKAAANEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=504107 KRG72_RS08880 WP_074869549.1 1792116..1792709(-) (ruvA) [Streptococcus equinus strain S1]
ATGTACGATTATATCAAAGGAAAATTAACTAAAATTACTGCGAAATACATTGTCATTGAAGCAGGGGGATTAGGCTATAT
TGTCAATGTTGCTAATCCTTACAGCTTTTCAGATTTGATGAATCAAGATATCCAAGTCTACCTTCATCAAGTAATTCGTG
AAGATGCTCAACTTTTGTTTGGCTTTCATACTGAAGACGAAAAGGCTGTTTTTCTTAATCTGATCTCAGTTTCTGGGATT
GGTCCTACAACTGCGCTAGCTATTATCGCAGTGGATGATAATGAAGGTTTGGTCAATGCCATCGATACAAGCGACATCAA
ATACTTGATGAAATTTCCGAAAATCGGGAAAAAAACTGCCCAACAAATGGTTTTGGATTTGGCAGGAAAATTTGTCGATG
TTTCTGTGGAAAATGGCAAAGTTTCTCAGACCAAAGCGGCAGCAAACGAGCAGCTTGAAGAAGCCATGGAAGCTCTTTTG
GCACTTGGCTACAAAGCAGCAGAGCTTAAGAAAATTCGTAAGTTCTTTGAAGGCACAAATGAAACAGCAGAACAATACAT
CAAATCAAGCCTTAAGATGCTGATGAAAGGCTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

68.182

100

0.685
  ruvA Streptococcus pneumoniae D39

68.182

100

0.685
  ruvA Streptococcus pneumoniae TIGR4

68.02

100

0.68
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.365

100

0.437