Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IT786_RS21180 Genome accession   NZ_CP064656
Coordinates   4413223..4414743 (+) Length   506 a.a.
NCBI ID   WP_058652506.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 3804     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4408223..4419743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT786_RS21155 (IT786_21155) ilvE 4409790..4410719 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  IT786_RS21160 (IT786_21160) ilvM 4410738..4411001 (-) 264 WP_045346813.1 acetolactate synthase 2 small subunit -
  IT786_RS21165 (IT786_21165) ilvG 4410998..4412644 (-) 1647 WP_058652507.1 acetolactate synthase 2 catalytic subunit -
  IT786_RS21170 (IT786_21170) ilvX 4412647..4412697 (-) 51 WP_192930497.1 peptide IlvX -
  IT786_RS21175 (IT786_21175) ilvL 4412784..4412882 (-) 99 WP_001311244.1 ilv operon leader peptide -
  IT786_RS21180 (IT786_21180) comM 4413223..4414743 (+) 1521 WP_058652506.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IT786_RS21185 (IT786_21185) - 4414772..4415110 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  IT786_RS21190 (IT786_21190) hdfR 4415229..4416050 (+) 822 WP_058652505.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54716.65 Da        Isoelectric Point: 7.5495

>NTDB_id=504094 IT786_RS21180 WP_058652506.1 4413223..4414743(+) (comM) [Enterobacter hormaechei strain 3804]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPDSPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSAAVRERVIAAQARQYARQNRLNARLNNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=504094 IT786_RS21180 WP_058652506.1 4413223..4414743(+) (comM) [Enterobacter hormaechei strain 3804]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGCCAGGGCTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGGGGCGTTCCCGGTGCAATATCGGGTGCGCTTGAAGCCATACGTGCGGGAA
GACAAATCATTGTAGCTAATGAAAACGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTAGCGCCAGATTCGCC
CGAGGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAACGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAACGGCCTGTTGCCACCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGTCCGGGTGAAATCTCACTGGCGC
ACAACGGCATTCTCTTCCTGGATGAATTGCCAGAGTTTGAACGCCGAGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCCGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCCCGCCCGGTCTGCTGAGGCAAACCGGTATCAAAGGC
GAAAGCTCAGCAGCTGTGCGTGAACGGGTTATTGCGGCGCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGAATAACAGCGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.529

100

0.439