Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KNN07_RS19810 Genome accession   NZ_CP076305
Coordinates   4065217..4066341 (-) Length   374 a.a.
NCBI ID   WP_106489469.1    Uniprot ID   -
Organism   Escherichia coli strain Survcare253     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4060217..4071341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN07_RS19780 (KNN07_19780) yrdA 4062017..4062571 (+) 555 WP_001286216.1 gamma carbonic anhydrase family protein -
  KNN07_RS19785 (KNN07_19785) yrdB 4062547..4062804 (-) 258 WP_001070563.1 DUF1488 domain-containing protein -
  KNN07_RS19790 (KNN07_19790) aroE 4062801..4063619 (-) 819 WP_000451239.1 shikimate dehydrogenase -
  KNN07_RS19795 (KNN07_19795) tsaC 4063624..4064196 (-) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  KNN07_RS19800 (KNN07_19800) yrdD 4064201..4064743 (-) 543 WP_001129719.1 type I DNA topoisomerase -
  KNN07_RS19805 (KNN07_19805) smg 4064772..4065245 (-) 474 WP_000460672.1 DUF494 family protein Smg -
  KNN07_RS19810 (KNN07_19810) dprA 4065217..4066341 (-) 1125 WP_106489469.1 DNA-protecting protein DprA Machinery gene
  KNN07_RS19815 (KNN07_19815) def 4066471..4066980 (+) 510 WP_000114984.1 peptide deformylase -
  KNN07_RS19820 (KNN07_19820) fmt 4066995..4067942 (+) 948 WP_001375336.1 methionyl-tRNA formyltransferase -
  KNN07_RS19825 (KNN07_19825) rsmB 4067988..4069277 (+) 1290 WP_001323790.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  KNN07_RS19830 (KNN07_19830) trkA 4069299..4070675 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  KNN07_RS19835 (KNN07_19835) mscL 4070805..4071215 (+) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40991.04 Da        Isoelectric Point: 6.6158

>NTDB_id=502085 KNN07_RS19810 WP_106489469.1 4065217..4066341(-) (dprA) [Escherichia coli strain Survcare253]
MVDTDIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLVTTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPKVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=502085 KNN07_RS19810 WP_106489469.1 4065217..4066341(-) (dprA) [Escherichia coli strain Survcare253]
ATGGTCGATACAGATATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGTGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGGTTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCTGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCCCGACTGGCTGCCAGTCTGCT
TGAACATGGCGGAGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAAAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.238

98.663

0.476
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.652

100

0.447
  dprA Vibrio cholerae strain A1552

44.652

100

0.447
  dprA Haemophilus influenzae Rd KW20

45.401

90.107

0.409
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Legionella pneumophila strain ERS1305867

43.658

90.642

0.396