Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KNN07_RS00870 Genome accession   NZ_CP076305
Coordinates   196483..197019 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Survcare253     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 191483..202019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN07_RS00850 (KNN07_00850) aphA 191772..192485 (+) 714 WP_001307512.1 acid phosphatase AphA -
  KNN07_RS00855 (KNN07_00855) yjbQ 192596..193012 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KNN07_RS00860 (KNN07_00860) yjbR 193016..193372 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KNN07_RS00865 (KNN07_00865) uvrA 193407..196229 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  KNN07_RS00870 (KNN07_00870) ssb 196483..197019 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KNN07_RS00875 (KNN07_00875) yjcB 197118..197399 (-) 282 WP_001295689.1 YjcB family protein -
  KNN07_RS00880 (KNN07_00880) pdeC 197829..198704 (+) 876 Protein_166 c-di-GMP phosphodiesterase PdeC -
  KNN07_RS00885 (KNN07_00885) - 198760..199457 (+) 698 WP_226926670.1 IS1 family transposase -
  KNN07_RS00890 (KNN07_00890) pdeC 199472..200191 (+) 720 Protein_168 c-di-GMP phosphodiesterase PdeC -
  KNN07_RS00895 (KNN07_00895) soxS 200194..200517 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KNN07_RS00900 (KNN07_00900) soxR 200603..201067 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=502035 KNN07_RS00870 WP_000168305.1 196483..197019(+) (ssb) [Escherichia coli strain Survcare253]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=502035 KNN07_RS00870 WP_000168305.1 196483..197019(+) (ssb) [Escherichia coli strain Survcare253]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489