Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IUJ52_RS06565 Genome accession   NZ_CP064379
Coordinates   1404389..1404922 (-) Length   177 a.a.
NCBI ID   WP_004724084.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1399389..1409922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS06545 (IUJ52_06540) - 1399852..1400163 (-) 312 WP_004724074.1 hypothetical protein -
  IUJ52_RS06550 (IUJ52_06545) gspM 1400156..1400806 (-) 651 WP_004724077.1 type II secretion system protein GspM -
  IUJ52_RS06555 (IUJ52_06550) - 1400806..1402251 (-) 1446 WP_038150620.1 MSHA biogenesis protein MshI -
  IUJ52_RS06560 (IUJ52_06555) csrD 1402259..1404253 (-) 1995 WP_050780245.1 RNase E specificity factor CsrD -
  IUJ52_RS06565 (IUJ52_06560) ssb 1404389..1404922 (-) 534 WP_004724084.1 single-stranded DNA-binding protein Machinery gene
  IUJ52_RS06570 (IUJ52_06565) qstR 1405205..1405855 (+) 651 WP_004724086.1 LuxR C-terminal-related transcriptional regulator Regulator
  IUJ52_RS06575 (IUJ52_06570) galU 1405984..1406853 (+) 870 WP_004724089.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  IUJ52_RS06580 (IUJ52_06575) uvrA 1406991..1409813 (+) 2823 WP_004724090.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19701.83 Da        Isoelectric Point: 5.7626

>NTDB_id=501436 IUJ52_RS06565 WP_004724084.1 1404389..1404922(-) (ssb) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGSRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=501436 IUJ52_RS06565 WP_004724084.1 1404389..1404922(-) (ssb) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTAGCCGTCAACAAGGCGGTATGCCAGCACAGGGCGGTGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAGCCTCAACAACCCGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

89.944

100

0.91
  ssb Glaesserella parasuis strain SC1401

54.645

100

0.565
  ssb Neisseria meningitidis MC58

47.458

100

0.475
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.475