Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   IUJ52_RS06570 Genome accession   NZ_CP064379
Coordinates   1405205..1405855 (+) Length   216 a.a.
NCBI ID   WP_004724086.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400205..1410855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS06555 (IUJ52_06550) - 1400806..1402251 (-) 1446 WP_038150620.1 MSHA biogenesis protein MshI -
  IUJ52_RS06560 (IUJ52_06555) csrD 1402259..1404253 (-) 1995 WP_050780245.1 RNase E specificity factor CsrD -
  IUJ52_RS06565 (IUJ52_06560) ssb 1404389..1404922 (-) 534 WP_004724084.1 single-stranded DNA-binding protein Machinery gene
  IUJ52_RS06570 (IUJ52_06565) qstR 1405205..1405855 (+) 651 WP_004724086.1 LuxR C-terminal-related transcriptional regulator Regulator
  IUJ52_RS06575 (IUJ52_06570) galU 1405984..1406853 (+) 870 WP_004724089.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  IUJ52_RS06580 (IUJ52_06575) uvrA 1406991..1409813 (+) 2823 WP_004724090.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24806.51 Da        Isoelectric Point: 8.7565

>NTDB_id=501437 IUJ52_RS06570 WP_004724086.1 1405205..1405855(+) (qstR) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MQRANYARTIYYLCLDATLPPPPPLGDALTRLALPVPQIEPEQLLQAYQADKHKILLFNYGEHDAIRQRLGPLPITSPHL
ETILFGVEKRLRTEELLTFGNLKGLFYQDDAPSSIAQGLAEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRE
LQILRSLQTGASNMQMAENLFISEFTVKSHLYQIFKKLSVKNRTQAITWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=501437 IUJ52_RS06570 WP_004724086.1 1405205..1405855(+) (qstR) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGCAACGCGCCAATTACGCCCGAACGATTTACTATTTGTGTCTGGATGCCACCCTCCCTCCGCCACCCCCATTGGGTGA
CGCACTCACACGACTCGCCCTGCCTGTGCCACAGATTGAACCCGAACAACTGTTGCAAGCGTATCAGGCCGACAAACATA
AAATCCTACTGTTTAATTATGGTGAACATGACGCGATTCGCCAGCGTTTAGGCCCCTTGCCCATCACCAGCCCCCACTTG
GAAACCATTTTATTTGGTGTAGAAAAACGCCTGCGCACGGAAGAACTTCTCACCTTTGGCAACCTGAAAGGCTTGTTTTA
TCAAGATGACGCGCCCTCATCGATCGCGCAGGGATTGGCGGAAATCATCAACGGTCAGAATTGGCTGCCACGCCATGTCA
GCAGTCAGTTATTGCATTACTATCGCCACATTTTCCAGCATCATCACACGCAAGCAACCATCGAGCTCACCACACGTGAA
TTACAAATCCTACGCAGCTTGCAGACGGGTGCCTCAAACATGCAGATGGCGGAAAACCTGTTCATCAGTGAATTTACCGT
CAAGTCGCACCTCTATCAGATCTTTAAAAAGCTCTCGGTCAAGAACCGAACTCAAGCCATCACATGGGCCAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

71.429

100

0.718
  qstR Vibrio parahaemolyticus RIMD 2210633

50.224

100

0.519
  qstR Vibrio campbellii strain DS40M4

51.389

100

0.514