Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IUJ44_RS06580 Genome accession   NZ_CP064375
Coordinates   1412954..1414441 (-) Length   495 a.a.
NCBI ID   WP_000010469.1    Uniprot ID   A0A6F8TL08
Organism   Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1407954..1419441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ44_RS06560 (IUJ44_06560) - 1408868..1409680 (+) 813 WP_000975212.1 TorF family putative porin -
  IUJ44_RS06565 (IUJ44_06565) - 1409723..1410601 (-) 879 WP_000772985.1 dihydrodipicolinate synthase family protein -
  IUJ44_RS06570 (IUJ44_06570) - 1410617..1411393 (-) 777 WP_000845035.1 aldolase -
  IUJ44_RS06575 (IUJ44_06575) - 1411505..1412939 (+) 1435 Protein_1260 PLP-dependent aminotransferase family protein -
  IUJ44_RS06580 (IUJ44_06580) comM 1412954..1414441 (-) 1488 WP_000010469.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IUJ44_RS06585 (IUJ44_06585) - 1414507..1414734 (-) 228 WP_000894500.1 accessory factor UbiK family protein -
  IUJ44_RS06590 (IUJ44_06590) glnK 1415014..1415352 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  IUJ44_RS06595 (IUJ44_06595) - 1415410..1416807 (+) 1398 WP_000738522.1 ammonium transporter -
  IUJ44_RS06600 (IUJ44_06600) nrdR 1416966..1417424 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  IUJ44_RS06605 (IUJ44_06605) ribD 1417440..1418525 (+) 1086 WP_001292503.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54451.35 Da        Isoelectric Point: 7.4014

>NTDB_id=501320 IUJ44_RS06580 WP_000010469.1 1412954..1414441(-) (comM) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQVPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAYAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQGCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=501320 IUJ44_RS06580 WP_000010469.1 1412954..1414441(-) (comM) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCTGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTCCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAAGTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCAGTTAACCATTTA
AAAGAGGTATGCGAGCACTTTTTAGGCACACAAAAGCTAGCTTATGCGCAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGACCTTGCAGATGTTAAAGGTCAGCTACGGCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACACTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCTTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACCTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGCATATCGGGAC
CGTTACTTGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAATTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGGTTGTTTGAATCAGGCGCT
CTCACCAAAACAACTAGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TL08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.687

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.4

100

0.469