Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KE3_RS09495 Genome accession   NC_021900
Coordinates   1890395..1890988 (-) Length   197 a.a.
NCBI ID   WP_020917597.1    Uniprot ID   A0AB33APB1
Organism   Streptococcus lutetiensis 033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1885395..1895988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS09475 (KE3_1957) recA 1885842..1886996 (-) 1155 WP_020917594.1 recombinase RecA Machinery gene
  KE3_RS09480 (KE3_1958) cinA 1887043..1888302 (-) 1260 WP_020917595.1 competence/damage-inducible protein A Machinery gene
  KE3_RS09485 - 1888431..1889360 (-) 930 WP_228380499.1 MFS transporter -
  KE3_RS11065 - 1889386..1889613 (-) 228 WP_228380500.1 MFS transporter -
  KE3_RS09490 (KE3_1959) - 1889814..1890365 (-) 552 WP_043895144.1 DNA-3-methyladenine glycosylase I -
  KE3_RS09495 (KE3_1960) ruvA 1890395..1890988 (-) 594 WP_020917597.1 Holliday junction branch migration protein RuvA Machinery gene
  KE3_RS09500 (KE3_1961) hexB 1890989..1892929 (-) 1941 WP_020917598.1 DNA mismatch repair endonuclease MutL Machinery gene
  KE3_RS09505 (KE3_1962) hexA 1893049..1895616 (-) 2568 WP_020917599.1 DNA mismatch repair protein MutS Machinery gene
  KE3_RS09510 (KE3_1963) - 1895603..1895956 (-) 354 WP_020917600.1 YlbF family regulator -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21781.27 Da        Isoelectric Point: 5.8325

>NTDB_id=50088 KE3_RS09495 WP_020917597.1 1890395..1890988(-) (ruvA) [Streptococcus lutetiensis 033]
MYDYIKGKLTKITAKYIIIEAGGLGYIVNVANPYSFSDVMNQDIQVYLHQVIREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSNIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENGKASQTKTAANEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKLSLKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=50088 KE3_RS09495 WP_020917597.1 1890395..1890988(-) (ruvA) [Streptococcus lutetiensis 033]
ATGTACGATTATATCAAAGGAAAATTAACTAAAATTACTGCAAAATACATTATTATTGAAGCAGGGGGATTAGGCTATAT
TGTCAACGTTGCCAATCCGTACAGCTTTTCAGATGTGATGAATCAAGATATCCAAGTCTACCTTCATCAAGTAATTCGTG
AAGATGCTCAACTTTTGTTTGGCTTTCATACTGAAGACGAAAAGGCTGTTTTTCTTAATCTGATTTCAGTTTCAGGGATT
GGTCCTACAACAGCGCTAGCTATTATCGCGGTGGATGATAACGAAGGTTTGGTTAATGCCATCGACACAAGCAACATTAA
ATACTTGATGAAATTCCCAAAAATCGGGAAAAAAACTGCCCAACAAATGGTTTTGGATTTGGCAGGAAAATTTGTCGATG
TTTCTGTGGAAAATGGCAAAGCTTCTCAGACCAAAACGGCAGCAAACGAGCAGCTTGAAGAAGCCATGGAAGCTCTTTTG
GCACTTGGATATAAAGCAGCAGAGCTTAAGAAAATCCGTAAGTTCTTTGAAGGCACAAATGAAACAGCAGAACAATACAT
CAAATTAAGCCTTAAGATGTTGATGAAAGGCTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33APB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.172

100

0.675
  ruvA Streptococcus pneumoniae D39

67.172

100

0.675
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.67
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.426

Multiple sequence alignment