Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IS481_RS16530 Genome accession   NZ_CP064338
Coordinates   3491149..3492687 (+) Length   512 a.a.
NCBI ID   WP_104356266.1    Uniprot ID   A0A2S5T7N2
Organism   Caldimonas thermodepolymerans strain DSM 15344     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3486149..3497687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS481_RS16500 (IS481_16500) - 3486636..3487358 (-) 723 WP_104356260.1 Crp/Fnr family transcriptional regulator -
  IS481_RS16505 (IS481_16505) - 3487427..3487855 (+) 429 WP_165908668.1 cupin domain-containing protein -
  IS481_RS16510 (IS481_16510) - 3487845..3488279 (+) 435 WP_104356262.1 hypothetical protein -
  IS481_RS16515 (IS481_16515) - 3488334..3489710 (-) 1377 WP_104356263.1 ammonium transporter -
  IS481_RS16520 (IS481_16520) - 3489734..3490072 (-) 339 WP_104356264.1 P-II family nitrogen regulator -
  IS481_RS16525 (IS481_16525) - 3490127..3490813 (-) 687 WP_104356265.1 TorF family putative porin -
  IS481_RS16530 (IS481_16530) comM 3491149..3492687 (+) 1539 WP_104356266.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IS481_RS16535 (IS481_16535) - 3492691..3493350 (-) 660 WP_104356267.1 LysE family translocator -
  IS481_RS16540 (IS481_16540) - 3493474..3494907 (-) 1434 WP_198425435.1 efflux transporter outer membrane subunit -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53939.06 Da        Isoelectric Point: 8.5137

>NTDB_id=500858 IS481_RS16530 WP_104356266.1 3491149..3492687(+) (comM) [Caldimonas thermodepolymerans strain DSM 15344]
MSLAVIRSRALAGLQAPEVTVEVHLANGLPSFTLVGLADTEVKEARERVRASLLNSGLEFPHNKRITVNLAPADLPKESG
RFDLPIALGILAASGQIDPARLAPYEFAGELSLAGDLRPVRGALAMSLALHRQGVPRALVLPLDSAREASLVQHAEVYGA
RHLLDVVQALLPPGEGSTAPEAGWVRMQPPAAQPAPAYPDLRDVKGQAGAKRALEIAAAGGHSLLMVGPPGTGKSMLAQR
FAGLLPPLDTEAALESAAVLSLAGLFAPERWRQRVFRAPHHSASPVALVGGGSPPRPGEISLAHHGVLFLDELPEFARPA
LEALREPLETGQITISRAARQAEFPARFQLIAAMNPCPCGYLGSRLRACRCGPDAVARYQARLSGPLLDRIDLQVEVTAV
PPEALMAAPDGEPSAAVAARVARARERQQARQDCTNAQLAGAALDTHCTMEAQAAGFLRNAAARLGWSGRSLHRVLKVAR
TIADLAGSERIDVPHLAEAIQLRRALPGAGPG

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=500858 IS481_RS16530 WP_104356266.1 3491149..3492687(+) (comM) [Caldimonas thermodepolymerans strain DSM 15344]
ATGTCGCTTGCCGTGATCCGCAGCCGCGCCCTGGCCGGGCTGCAGGCACCGGAAGTCACCGTCGAGGTGCACCTGGCCAA
CGGCCTGCCCAGCTTCACGCTGGTCGGGCTGGCCGACACCGAGGTCAAGGAGGCGCGCGAACGCGTGCGCGCCTCGCTGC
TCAACAGCGGGCTGGAGTTCCCGCACAACAAGCGCATCACGGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAGTCCGGG
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCCAGCGGCCAGATCGACCCGGCGCGGCTGGCGCCCTATGAATT
CGCCGGTGAGCTCTCGCTGGCCGGCGACCTGCGGCCGGTGCGCGGTGCGCTGGCCATGAGCCTGGCGCTGCACCGCCAGG
GCGTGCCGCGGGCGCTGGTGCTGCCGCTGGACAGCGCCCGCGAGGCCTCGCTGGTGCAGCACGCCGAGGTCTACGGCGCG
CGCCACCTGCTGGACGTGGTGCAGGCCCTGCTGCCGCCGGGCGAGGGCAGCACGGCGCCCGAGGCCGGCTGGGTGCGCAT
GCAGCCGCCTGCGGCGCAGCCCGCCCCCGCCTACCCCGACCTGCGCGACGTGAAGGGCCAGGCCGGCGCCAAGCGCGCGC
TCGAGATCGCCGCGGCCGGCGGCCACAGCCTGCTGATGGTGGGGCCGCCCGGCACCGGCAAGTCCATGCTGGCGCAGCGC
TTTGCCGGGTTGCTGCCGCCGCTGGACACCGAGGCGGCACTGGAATCGGCCGCGGTGCTCAGCCTGGCCGGGCTGTTCGC
GCCGGAACGCTGGCGCCAGCGCGTGTTCCGGGCCCCGCACCACAGTGCCTCGCCGGTCGCGCTGGTGGGCGGCGGCTCGC
CGCCGCGCCCGGGCGAGATCTCGCTGGCGCACCACGGCGTGCTGTTCCTCGACGAGCTGCCCGAGTTCGCGCGCCCGGCG
CTGGAGGCGCTGCGCGAGCCGCTGGAAACCGGCCAGATCACGATCTCGCGCGCCGCGCGCCAGGCCGAGTTCCCGGCGCG
CTTCCAGCTGATCGCCGCGATGAACCCCTGCCCCTGCGGCTACCTCGGCTCGCGCCTGCGGGCCTGCCGCTGCGGGCCGG
ATGCGGTGGCGCGCTACCAGGCGCGCCTGAGCGGCCCGCTGCTGGACCGCATCGACCTGCAGGTGGAGGTCACGGCCGTG
CCGCCGGAAGCGCTGATGGCCGCGCCGGACGGCGAACCCAGCGCCGCGGTGGCCGCGCGCGTGGCGCGCGCCCGGGAACG
CCAGCAGGCGCGCCAGGACTGCACCAACGCCCAGCTGGCCGGCGCGGCGCTCGACACCCACTGCACGATGGAGGCGCAGG
CCGCCGGCTTCCTGCGCAACGCCGCCGCGCGGCTGGGCTGGTCCGGCCGCAGCCTGCACCGGGTGCTCAAGGTTGCGCGC
ACGATCGCCGACCTCGCCGGCAGCGAGCGCATCGACGTGCCGCACCTGGCCGAGGCGATCCAGCTGCGGCGGGCGCTGCC
CGGCGCCGGGCCGGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(411-503)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S5T7N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.36

98.828

0.527
  comM Haemophilus influenzae Rd KW20

52.767

98.828

0.521
  comM Vibrio campbellii strain DS40M4

52.372

98.828

0.518
  comM Glaesserella parasuis strain SC1401

52.268

99.023

0.518
  comM Legionella pneumophila str. Paris

50.289

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.289

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.418

99.414

0.432