Detailed information NTG0500855

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: IS481_RS14600
• Genome accession: NZ_CP064338
• Coordinates: 3102098..3103156 (-)
• Length: 352 a.a.
• NCBI ID: WP_104357824.1
• Uniprot ID: A0A2S5T3H3
• Organism: Caldimonas thermodepolymerans strain DSM 15344
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3097098..3108156

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IS481_RS14580 (IS481_14580)	-	3098682..3098915 (-)	234	WP_104357891.1	PP0621 family protein	-
IS481_RS14585 (IS481_14585)	-	3098935..3099717 (-)	783	WP_232529312.1	cytochrome C assembly family protein	-
IS481_RS14590 (IS481_14590)	ffh	3099835..3101199 (+)	1365	WP_104357826.1	signal recognition particle protein	-
IS481_RS14595 (IS481_14595)	-	3101329..3102045 (+)	717	WP_104357825.1	DUF2726 domain-containing protein	-
IS481_RS14600 (IS481_14600)	pilA	3102098..3103156 (-)	1059	WP_104357824.1	signal recognition particle-docking protein FtsY	Machinery gene
IS481_RS14605 (IS481_14605)	rsmD	3103244..3103831 (+)	588	WP_104357823.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
IS481_RS14610 (IS481_14610)	coaD	3103863..3104366 (+)	504	WP_104357822.1	pantetheine-phosphate adenylyltransferase	-
IS481_RS14615 (IS481_14615)	-	3104378..3104644 (+)	267	WP_104357821.1	YfhL family 4Fe-4S dicluster ferredoxin	-
IS481_RS14620 (IS481_14620)	-	3104667..3105074 (-)	408	WP_104357820.1	hypothetical protein	-
IS481_RS14625 (IS481_14625)	pth	3105071..3105697 (-)	627	WP_104357819.1	aminoacyl-tRNA hydrolase	-
IS481_RS14630 (IS481_14630)	-	3105802..3106992 (-)	1191	WP_104357818.1	CynX/NimT family MFS transporter	-
IS481_RS14635 (IS481_14635)	-	3107123..3107755 (-)	633	WP_104357817.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37141.80 Da
• Isoelectric Point: 6.8856

>NTDB_id=500855 IS481_RS14600 WP_104357824.1 3102098..3103156(-) (pilA) [Caldimonas thermodepolymerans strain DSM 15344]
MFSFFKKKSPPPASAPAPAPAPVEAPAAPAPQAPVEPAAPAPAVAAAPAEPAPERRSWLDKLKQGLRRTGSSITQVFVGA
RIDDALYEELEAALLMADAGVKATEHLLADLKRRVKESKATDAAAVKALLVDAVTDLLKPLEKPLVVGRYTPTVMMVVGV
NGAGKTTSIGKLTRHLAESNQKVLLAAADTFRAAAREQLAVWADRNQVEIVSQEGGDPAAVTYDAVTAGRARGCDVVIAD
TAGRLPTQLHLMEELKKIRRVIAKADETAPHEVLLVVDGNTGQNALAQVKAFDDALQLTGLIVTKLDGTAKGGVLAAIAR
ERPVPVYFIGVGEKLEDLQTFNAREFAQALLD

Nucleotide

• Length: 1059 bp

>NTDB_id=500855 IS481_RS14600 WP_104357824.1 3102098..3103156(-) (pilA) [Caldimonas thermodepolymerans strain DSM 15344]
ATGTTCAGTTTCTTCAAGAAAAAATCCCCCCCGCCGGCCTCCGCGCCTGCCCCTGCACCTGCCCCTGTCGAAGCGCCGGC
CGCCCCCGCGCCCCAGGCGCCGGTCGAGCCCGCGGCGCCGGCTCCCGCGGTAGCGGCGGCGCCGGCCGAGCCCGCGCCCG
AGCGCCGCTCGTGGCTGGACAAGCTCAAGCAGGGCCTGCGCCGCACCGGCTCGAGCATCACCCAGGTGTTCGTCGGCGCG
CGCATCGACGACGCGCTGTACGAGGAGCTCGAGGCCGCGCTGCTGATGGCCGACGCCGGCGTGAAGGCGACCGAGCACCT
GCTTGCCGACCTCAAGCGCCGGGTCAAGGAAAGCAAGGCCACCGACGCGGCGGCCGTCAAGGCGCTGCTGGTCGATGCAG
TGACCGACCTGCTCAAGCCGCTCGAGAAGCCGCTGGTCGTGGGCCGGTACACGCCGACCGTGATGATGGTCGTGGGCGTC
AACGGCGCGGGCAAGACCACCAGCATCGGCAAGCTCACGCGCCACCTGGCCGAATCGAACCAGAAGGTGCTGCTGGCTGC
GGCCGACACCTTCCGTGCCGCGGCGCGCGAGCAGCTCGCGGTGTGGGCCGACCGCAACCAGGTCGAGATCGTCAGCCAGG
AAGGCGGCGACCCGGCCGCGGTGACCTATGACGCGGTGACGGCCGGCCGTGCGCGCGGCTGCGACGTCGTGATCGCCGAC
ACCGCCGGGCGGCTGCCGACGCAGCTGCACCTGATGGAGGAGCTGAAGAAGATCCGCCGCGTGATCGCCAAGGCCGACGA
GACCGCACCGCACGAGGTGCTGCTGGTGGTCGACGGCAACACCGGCCAGAACGCGCTGGCCCAGGTCAAGGCCTTCGACG
ACGCGCTGCAGCTGACCGGCCTGATCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTCGCGGCGATCGCGCGC
GAGCGCCCGGTGCCGGTGTACTTCATCGGCGTGGGCGAGAAGCTCGAGGACCTGCAGACCTTCAACGCGCGCGAGTTCGC
GCAGGCGCTGCTGGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (152-351)

• SRP54-type protein, helical bundle domain (SRP54_N) (70-133)

3D structure

• AlphaFold DB: A0A2S5T3H3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	56.369	89.205	0.503