Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IS481_RS01100 Genome accession   NZ_CP064338
Coordinates   224874..225374 (-) Length   166 a.a.
NCBI ID   WP_104357436.1    Uniprot ID   A0A2S5T513
Organism   Caldimonas thermodepolymerans strain DSM 15344     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 219874..230374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS481_RS01075 (IS481_01075) - 219895..220389 (+) 495 WP_104357432.1 NUDIX hydrolase -
  IS481_RS01080 (IS481_01080) mnmA 220386..221483 (+) 1098 WP_104357433.1 tRNA 2-thiouridine(34) synthase MnmA -
  IS481_RS01085 (IS481_01085) - 221586..222872 (+) 1287 WP_104357434.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein -
  IS481_RS01090 (IS481_01090) - 222927..223583 (-) 657 WP_232529407.1 CAP domain-containing protein -
  IS481_RS01095 (IS481_01095) - 223671..224660 (-) 990 WP_104357489.1 glucokinase -
  IS481_RS01100 (IS481_01100) ssb 224874..225374 (-) 501 WP_104357436.1 single-stranded DNA-binding protein Machinery gene
  IS481_RS01105 (IS481_01105) - 225567..226946 (+) 1380 WP_104357437.1 chloride channel protein -
  IS481_RS01110 (IS481_01110) - 227231..228319 (+) 1089 WP_104357438.1 hydrogenase small subunit -
  IS481_RS01115 (IS481_01115) - 228383..230239 (+) 1857 WP_104357439.1 nickel-dependent hydrogenase large subunit -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18015.84 Da        Isoelectric Point: 5.3752

>NTDB_id=500845 IS481_RS01100 WP_104357436.1 224874..225374(-) (ssb) [Caldimonas thermodepolymerans strain DSM 15344]
MASVNKVILIGNLGRDPEVRYTPSGSAVCNLSLATTRNWKSRDTGERQEETEWHRVVLYDRLAEIAGEYLRKGRSVYIEG
RLKTRKWQGQDGKDNYTTEIIAEQMQLLGGREGGSSGGGDEGGGYSREPYEGGGGGGRSAPAPRAASKPAPKTSTGFDDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=500845 IS481_RS01100 WP_104357436.1 224874..225374(-) (ssb) [Caldimonas thermodepolymerans strain DSM 15344]
ATGGCCTCTGTCAACAAAGTCATCCTGATCGGCAACCTCGGCCGCGACCCCGAGGTCCGCTACACGCCCAGCGGCTCGGC
GGTGTGCAACCTGTCGCTGGCCACCACGCGCAACTGGAAGAGCCGCGACACCGGGGAACGGCAGGAAGAGACCGAATGGC
ACCGGGTGGTGCTGTATGACCGCCTGGCCGAAATCGCCGGCGAATACCTGCGCAAGGGCCGCTCGGTCTACATCGAGGGC
CGCCTGAAGACCCGCAAGTGGCAAGGCCAGGACGGCAAGGACAACTACACCACCGAGATCATCGCCGAGCAGATGCAGTT
GCTGGGCGGCCGCGAAGGCGGCAGCAGTGGTGGCGGCGACGAAGGCGGCGGCTACAGCCGCGAGCCGTACGAGGGGGGTG
GCGGCGGCGGCCGTTCCGCCCCGGCGCCGCGCGCGGCCAGCAAGCCCGCGCCCAAGACGTCGACCGGGTTCGACGACATG
GACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S5T513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.667

100

0.56
  ssb Neisseria gonorrhoeae MS11

50.857

100

0.536
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.536
  ssb Neisseria meningitidis MC58

49.714

100

0.524
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.483

100

0.361