Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LacP0245_RS14690 | Genome accession | NZ_CP064299 |
| Coordinates | 3036663..3037106 (+) | Length | 147 a.a. |
| NCBI ID | WP_194959150.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus paracasei subsp. tolerans strain MGB0245 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3028553..3042142 | 3036663..3037106 | within | 0 |
Gene organization within MGE regions
Location: 3028553..3042142
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LacP0245_RS14620 (LacP0245_14620) | - | 3028553..3029722 (-) | 1170 | WP_194959139.1 | site-specific integrase | - |
| LacP0245_RS15720 | - | 3029897..3030529 (-) | 633 | WP_228768588.1 | hypothetical protein | - |
| LacP0245_RS14630 (LacP0245_14630) | - | 3030586..3031356 (-) | 771 | WP_228768607.1 | helix-turn-helix transcriptional regulator | - |
| LacP0245_RS14635 (LacP0245_14635) | - | 3031557..3031796 (+) | 240 | WP_194959141.1 | helix-turn-helix transcriptional regulator | - |
| LacP0245_RS14640 (LacP0245_14640) | - | 3031831..3032649 (+) | 819 | WP_194959142.1 | ORF6N domain-containing protein | - |
| LacP0245_RS14645 (LacP0245_14645) | - | 3032646..3032795 (+) | 150 | WP_021354148.1 | hypothetical protein | - |
| LacP0245_RS14650 (LacP0245_14650) | - | 3032861..3033085 (+) | 225 | WP_194959143.1 | hypothetical protein | - |
| LacP0245_RS14655 (LacP0245_14655) | - | 3033069..3033554 (-) | 486 | WP_194959144.1 | DUF2321 domain-containing protein | - |
| LacP0245_RS14660 (LacP0245_14660) | - | 3033622..3033945 (+) | 324 | WP_194959145.1 | DUF771 domain-containing protein | - |
| LacP0245_RS14665 (LacP0245_14665) | - | 3034027..3034179 (+) | 153 | WP_016375940.1 | hypothetical protein | - |
| LacP0245_RS14670 (LacP0245_14670) | - | 3034184..3034387 (+) | 204 | WP_194959146.1 | hypothetical protein | - |
| LacP0245_RS14675 (LacP0245_14675) | - | 3034405..3035292 (+) | 888 | WP_194959147.1 | DUF1351 domain-containing protein | - |
| LacP0245_RS14680 (LacP0245_14680) | - | 3035292..3036005 (+) | 714 | WP_194959148.1 | ERF family protein | - |
| LacP0245_RS14685 (LacP0245_14685) | - | 3035980..3036648 (+) | 669 | WP_194959149.1 | putative HNHc nuclease | - |
| LacP0245_RS14690 (LacP0245_14690) | ssb | 3036663..3037106 (+) | 444 | WP_194959150.1 | single-stranded DNA-binding protein | Machinery gene |
| LacP0245_RS14695 (LacP0245_14695) | - | 3037208..3037918 (+) | 711 | WP_228768589.1 | replication protein | - |
| LacP0245_RS14700 (LacP0245_14700) | - | 3037905..3038687 (+) | 783 | WP_194959152.1 | ATP-binding protein | - |
| LacP0245_RS14705 (LacP0245_14705) | - | 3038684..3039016 (+) | 333 | WP_194959153.1 | hypothetical protein | - |
| LacP0245_RS14710 (LacP0245_14710) | - | 3039013..3039351 (+) | 339 | WP_194959257.1 | hypothetical protein | - |
| LacP0245_RS14715 (LacP0245_14715) | - | 3039463..3039678 (+) | 216 | WP_004562022.1 | helix-turn-helix domain-containing protein | - |
| LacP0245_RS14720 (LacP0245_14720) | - | 3039675..3040124 (+) | 450 | WP_194959154.1 | hypothetical protein | - |
| LacP0245_RS14725 (LacP0245_14725) | - | 3040127..3040510 (+) | 384 | WP_194959155.1 | DUF1064 domain-containing protein | - |
| LacP0245_RS14730 (LacP0245_14730) | - | 3040522..3041232 (+) | 711 | WP_194959156.1 | N-6 DNA methylase | - |
| LacP0245_RS14735 (LacP0245_14735) | - | 3041219..3042142 (+) | 924 | WP_194959157.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 16151.84 Da Isoelectric Point: 5.1237
>NTDB_id=500580 LacP0245_RS14690 WP_194959150.1 3036663..3037106(+) (ssb) [Lacticaseibacillus paracasei subsp. tolerans strain MGB0245]
MLNSVALTGRLTKPVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAQGQRVYVTEVIVENFALLEPKGSSQGQPTQPTNQGYVGNQPANYTQPPASQPIDISDDDLPF
MLNSVALTGRLTKPVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAQGQRVYVTEVIVENFALLEPKGSSQGQPTQPTNQGYVGNQPANYTQPPASQPIDISDDDLPF
Nucleotide
Download Length: 444 bp
>NTDB_id=500580 LacP0245_RS14690 WP_194959150.1 3036663..3037106(+) (ssb) [Lacticaseibacillus paracasei subsp. tolerans strain MGB0245]
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCGGTTGATCTTCGCTATACGCAAAGTGGAACAGCAGTTGG
CTCATTTACTATTGCTGTTGATCGCCAATTTCGTAGCGCAAATGGGGAACGTGAAACTGACTTCATCAATTGTGCCATCT
GGCGTAAGTCTGCTGAGAATTTTGCCAACTTCACACATAAGGGTTCACTTGTTGGCATCGAAGGCCATATCCAAACGCGT
ACGTACGACAACGCACAGGGTCAACGAGTCTATGTGACCGAAGTCATCGTTGAGAATTTTGCGCTCTTGGAGCCTAAAGG
TTCATCGCAGGGACAACCAACTCAGCCGACTAATCAAGGATATGTGGGTAATCAACCAGCCAATTACACTCAACCGCCAG
CTAGTCAGCCAATCGATATCAGCGATGATGATCTTCCATTCTGA
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCGGTTGATCTTCGCTATACGCAAAGTGGAACAGCAGTTGG
CTCATTTACTATTGCTGTTGATCGCCAATTTCGTAGCGCAAATGGGGAACGTGAAACTGACTTCATCAATTGTGCCATCT
GGCGTAAGTCTGCTGAGAATTTTGCCAACTTCACACATAAGGGTTCACTTGTTGGCATCGAAGGCCATATCCAAACGCGT
ACGTACGACAACGCACAGGGTCAACGAGTCTATGTGACCGAAGTCATCGTTGAGAATTTTGCGCTCTTGGAGCCTAAAGG
TTCATCGCAGGGACAACCAACTCAGCCGACTAATCAAGGATATGTGGGTAATCAACCAGCCAATTACACTCAACCGCCAG
CTAGTCAGCCAATCGATATCAGCGATGATGATCTTCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.294 |
100 |
0.639 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.588 |
100 |
0.585 |
| ssb | Vibrio cholerae strain A1552 |
33.721 |
100 |
0.395 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
72.109 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
30.556 |
100 |
0.374 |