Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IQ966_RS09565 Genome accession   NZ_CP064275
Coordinates   1797000..1797500 (-) Length   166 a.a.
NCBI ID   WP_013059914.1    Uniprot ID   A0A0B6A5N1
Organism   Priestia megaterium strain B1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1792000..1802500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ966_RS09545 rplI 1793155..1793604 (-) 450 WP_013085555.1 50S ribosomal protein L9 -
  IQ966_RS09550 - 1793601..1795574 (-) 1974 WP_025752414.1 DHH family phosphoesterase -
  IQ966_RS09555 - 1795611..1796555 (-) 945 WP_115655112.1 YybS family protein -
  IQ966_RS09560 rpsR 1796694..1796933 (-) 240 WP_013059913.1 30S ribosomal protein S18 -
  IQ966_RS09565 ssbA 1797000..1797500 (-) 501 WP_013059914.1 single-stranded DNA-binding protein Machinery gene
  IQ966_RS09570 rpsF 1797549..1797836 (-) 288 WP_013059915.1 30S ribosomal protein S6 -
  IQ966_RS09575 ychF 1798026..1799126 (-) 1101 WP_014457678.1 redox-regulated ATPase YchF -
  IQ966_RS09580 - 1799297..1799494 (-) 198 WP_013059917.1 DUF951 domain-containing protein -
  IQ966_RS09585 - 1799509..1800402 (-) 894 WP_014457677.1 mechanosensitive ion channel family protein -
  IQ966_RS09590 - 1800470..1801483 (-) 1014 WP_014457676.1 membrane protein -
  IQ966_RS09595 yyaC 1801570..1802190 (+) 621 WP_042991799.1 spore protease YyaC -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18132.76 Da        Isoelectric Point: 4.6529

>NTDB_id=500513 IQ966_RS09565 WP_013059914.1 1797000..1797500(-) (ssbA) [Priestia megaterium strain B1]
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=500513 IQ966_RS09565 WP_013059914.1 1797000..1797500(-) (ssbA) [Priestia megaterium strain B1]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCCAATTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGACGGTCGTCGTGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAATTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCT
GATGACGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6A5N1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.765
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.608
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Vibrio cholerae strain A1552

33.889

100

0.367
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367