Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   KE3_RS02410 Genome accession   NC_021900
Coordinates   447570..448232 (+) Length   220 a.a.
NCBI ID   WP_020916320.1    Uniprot ID   A0AB33AKC5
Organism   Streptococcus lutetiensis 033     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442570..453232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS11125 (KE3_0484) - 442707..444107 (+) 1401 WP_081048448.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  KE3_RS02390 (KE3_0485) - 444107..444463 (+) 357 WP_020916316.1 S1 RNA-binding domain-containing protein -
  KE3_RS02395 (KE3_0486) cysK 444562..445491 (-) 930 WP_020916317.1 cysteine synthase A -
  KE3_RS02400 (KE3_0487) - 445591..446217 (-) 627 WP_020916318.1 YigZ family protein -
  KE3_RS02405 (KE3_0488) comFA/cflA 446272..447570 (+) 1299 WP_020916319.1 DEAD/DEAH box helicase Machinery gene
  KE3_RS02410 (KE3_0489) comFC/cflB 447570..448232 (+) 663 WP_020916320.1 ComF family protein Machinery gene
  KE3_RS02415 (KE3_0490) hpf 448309..448857 (+) 549 WP_020916321.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25771.04 Da        Isoelectric Point: 9.4680

>NTDB_id=50019 KE3_RS02410 WP_020916320.1 447570..448232(+) (comFC/cflB) [Streptococcus lutetiensis 033]
MKCLLCGQDFSEKEIFLGIISIRKNNYLVCPECHNIFEKIGDVHCPTCYRKDYKEQCEDCKKWAKENHKVSHRALYTYNE
AMKEYFSKYKFQGDAMLSNVFAKEVKQVLKNYKGYTIIPVPLSKERMKERQFNQITAILNAAKIPYHDILEKKDIKKQSE
KSRKERLTSDCPFRIKSDSQIPDKVLILDDIYTTGATLKGIYHLFYEKGAKIVKSLTIAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=50019 KE3_RS02410 WP_020916320.1 447570..448232(+) (comFC/cflB) [Streptococcus lutetiensis 033]
ATGAAATGCCTCCTTTGTGGACAAGACTTTTCTGAGAAAGAAATATTTTTAGGAATTATTTCAATACGTAAAAATAATTA
TTTGGTTTGTCCAGAGTGCCATAATATCTTTGAAAAGATTGGTGATGTGCATTGTCCTACTTGTTATCGAAAAGACTACA
AAGAGCAATGTGAAGATTGTAAAAAGTGGGCAAAAGAAAATCACAAGGTTTCTCATCGAGCACTTTATACTTATAATGAA
GCCATGAAAGAGTATTTTTCTAAATACAAATTTCAAGGAGATGCTATGTTAAGTAATGTTTTTGCAAAAGAAGTCAAACA
AGTCTTGAAGAATTACAAAGGCTATACTATTATTCCAGTACCCTTAAGTAAAGAAAGGATGAAAGAAAGACAATTTAACC
AAATTACAGCCATTCTAAATGCTGCCAAAATTCCCTATCATGATATTTTAGAGAAGAAGGATATTAAAAAGCAATCTGAA
AAAAGTAGAAAAGAAAGATTGACGAGTGATTGCCCGTTTAGGATTAAATCAGACAGCCAGATACCAGATAAAGTATTAAT
TCTTGATGATATTTACACAACGGGAGCAACTTTAAAAGGAATTTATCACTTATTTTATGAAAAAGGAGCAAAGATTGTAA
AAAGTTTAACAATTGCACGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33AKC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

45

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

45

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

45

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

45

100

0.45
  comFC/cflB Streptococcus mitis NCTC 12261

45

100

0.45
  comFC/cflB Streptococcus mitis SK321

43.636

100

0.436
  comFC Bacillus subtilis subsp. subtilis str. 168

35.242

100

0.364

Multiple sequence alignment