Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IS519_RS10330 Genome accession   NZ_CP064170
Coordinates   2309103..2310626 (-) Length   507 a.a.
NCBI ID   WP_248638721.1    Uniprot ID   -
Organism   Vibrio crassostreae strain ED395     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2304103..2315626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS519_RS10305 (IS519_10300) - 2304220..2304483 (+) 264 WP_009848104.1 YihD family protein -
  IS519_RS10310 (IS519_10305) ccoG 2304810..2306228 (+) 1419 WP_050633570.1 cytochrome c oxidase accessory protein CcoG -
  IS519_RS10315 (IS519_10310) - 2306302..2307288 (+) 987 WP_248641322.1 serine/threonine protein kinase -
  IS519_RS10320 (IS519_10315) - 2307344..2307943 (+) 600 WP_048610871.1 thiol:disulfide interchange protein DsbA/DsbL -
  IS519_RS10325 (IS519_10320) - 2308083..2309039 (+) 957 WP_248638719.1 DUF2860 domain-containing protein -
  IS519_RS10330 (IS519_10325) comM 2309103..2310626 (-) 1524 WP_248638721.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IS519_RS10335 (IS519_10330) ilvG 2311099..2312745 (+) 1647 WP_248638731.1 acetolactate synthase 2 catalytic subunit -
  IS519_RS10340 (IS519_10335) ilvM 2312747..2313031 (+) 285 WP_017055442.1 acetolactate synthase 2 small subunit -
  IS519_RS10345 (IS519_10340) - 2313044..2314012 (+) 969 WP_065678323.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55556.67 Da        Isoelectric Point: 7.6543

>NTDB_id=499934 IS519_RS10330 WP_248638721.1 2309103..2310626(-) (comM) [Vibrio crassostreae strain ED395]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLHRTEHHQANVSELRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVRQARELMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=499934 IS519_RS10330 WP_248638721.1 2309103..2310626(-) (comM) [Vibrio crassostreae strain ED395]
ATGGGACTCGCGATAATTCATAGTCGAGCTAGTGTGGGTGTAGAGGCGCCAGAAGTGACCGTTGAGGTGCATATAAGCAA
CGGAATGCCTGGCTTTACGCTGGTGGGTCTACCTGAAACAACGGTCAAGGAATCTAAAGATCGAGTGAGAAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCATCGAAAAGAATCACGGTCAACCTCGCACCTGCCGATTTGCCCAAAGAGGGAGGCCGT
TTCGACCTGCCAATCGCGCTTGGGATTTTAGTCGCATCCGATCAGCTTCCGACATCAAAAATAGCTCAGCATGAATTCAT
CGGTGAGTTGGCGTTGTCAGGAGAATTACGCTCAGTAAAGGGTGTGTTGCCTGCGACGTTAGCCGCCGACAGTGTCGAAC
GATGCTTAGTTGTCCCACATCATAACGGTGATCAGGCTGCGCTGGTGGGCAAGGGAGCCCATAAGTCTGCACAAACCTTG
TTGGAGGTTTGCGCTGACATGTGTGGACAGGCTCAGCTTGGGCTACATAGAACGGAACATCATCAGGCTAATGTTTCAGA
GCTTCGCGACTTGCAGGACATCATTGGCCAACAACAAGGCAAGCGAGCTCTGGAGATAGCCGCAGCTGGGAATCATAACT
TATTGTTTCTTGGCCCGCCCGGAACCGGAAAGACCATGCTCGCTTCTCGACTGCGTGACTTGCTGCCTGAAATGAGTGAT
GACGAGGCGATGGAAACCGCGTCGGTGGCCTCGTTAACGCAACAAGAGATCAATCAATACAACTGGAAGCAACGACCTTT
TCGATCCCCTCACCATTCAAGTTCGATGGCGGCATTGGTGGGTGGTGGCTCAGTGCCTCGCCCCGGAGAGATATCTTTGG
CGCATAACGGCTTATTGTTCTTGGATGAAATGCCGGAGTTTGAACGTAAGGTGCTTGATTCATTACGAGAACCATTAGAG
TCAGGAGAGATCATTATCTCTCGTGTTGCGGGCAAGACTCGTTTTCCTGCTCGCTTTCAATTGGTTGGTGCACTCAATCC
AAGCCCTACGGGTTATTACGAAGGTAACCAGGCGCGCGCCAACCCACAGATCATACTGCGTTACCTCAATCGACTATCAG
GGCCGTTATTGGATAGATTCGATATGTCGTTAGAGATCCCATTGCTTCCTAAAGGCATGCTCGCTGAGGGTGGTGACCGT
GGGGAAACGACTCAAGTGGTAAAGCAAAGGGTCAGGCAGGCGCGTGAGTTGATGCTATCTCGCAACCATAAATCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAGAAGTATTGCCCGTTAAGACGCGAGGATGCGGAGTTTCTGGAAACGGCGTTGCACC
GACTGGGTCTGTCGATTCGTGCTTATCATCGAATCATTAAGGTGGCACGAACCATTGCCGACCTTGACGGTAATGAGCAG
ATCGAAAAGAAGCATCTATCGGAAGCGCTTGGCTATCGCGCGATGGATCGCTTGCTGAAGCAACTCACGGCTCAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.629

100

0.836
  comM Vibrio campbellii strain DS40M4

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

49.497

98.028

0.485
  comM Legionella pneumophila strain ERS1305867

49.497

98.028

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.406

100

0.424