Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IS519_RS08695 Genome accession   NZ_CP064170
Coordinates   1963171..1963710 (-) Length   179 a.a.
NCBI ID   WP_248638561.1    Uniprot ID   -
Organism   Vibrio crassostreae strain ED395     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1958171..1968710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS519_RS08675 (IS519_08675) - 1958574..1958909 (-) 336 WP_248638560.1 MSHA biogenesis protein MshK -
  IS519_RS08680 (IS519_08680) pilO 1958902..1959549 (-) 648 WP_048618122.1 type 4a pilus biogenesis protein PilO -
  IS519_RS08685 (IS519_08685) - 1959549..1960991 (-) 1443 WP_048614818.1 MSHA biogenesis protein MshI -
  IS519_RS08690 (IS519_08690) csrD 1960994..1963009 (-) 2016 WP_048614817.1 RNase E specificity factor CsrD -
  IS519_RS08695 (IS519_08695) ssb 1963171..1963710 (-) 540 WP_248638561.1 single-stranded DNA-binding protein Machinery gene
  IS519_RS08700 (IS519_08700) qstR 1963989..1964636 (+) 648 WP_029405754.1 LuxR C-terminal-related transcriptional regulator Regulator
  IS519_RS08705 (IS519_08705) galU 1964794..1965666 (+) 873 WP_048609613.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  IS519_RS08710 (IS519_08710) uvrA 1965816..1968647 (+) 2832 WP_248638562.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19919.01 Da        Isoelectric Point: 5.2358

>NTDB_id=499930 IS519_RS08695 WP_248638561.1 1963171..1963710(-) (ssb) [Vibrio crassostreae strain ED395]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAPQQAPQ
QAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=499930 IS519_RS08695 WP_248638561.1 1963171..1963710(-) (ssb) [Vibrio crassostreae strain ED395]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTTGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACACGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTGCAAGGCTT
CAATGGTGTAATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGCATGGGTAACAACCAACAGCAAGGTGGTTGGGGTCAGC
CACAGCAGCCACAACAACAGCAGCAACAATACAGTGCTCCCGCTCAACAGCAGCCAAAAGCACCTCAACAAGCTCCTCAG
CAGGCTCAACCTCAATATAATGAGCCACCAATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.032

100

0.821
  ssb Glaesserella parasuis strain SC1401

58.242

100

0.592
  ssb Neisseria meningitidis MC58

47.191

99.441

0.469
  ssb Neisseria gonorrhoeae MS11

47.191

99.441

0.469