Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   IS519_RS08700 Genome accession   NZ_CP064170
Coordinates   1963989..1964636 (+) Length   215 a.a.
NCBI ID   WP_029405754.1    Uniprot ID   A0A1E5FWH4
Organism   Vibrio crassostreae strain ED395     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1958989..1969636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS519_RS08685 (IS519_08685) - 1959549..1960991 (-) 1443 WP_048614818.1 MSHA biogenesis protein MshI -
  IS519_RS08690 (IS519_08690) csrD 1960994..1963009 (-) 2016 WP_048614817.1 RNase E specificity factor CsrD -
  IS519_RS08695 (IS519_08695) ssb 1963171..1963710 (-) 540 WP_248638561.1 single-stranded DNA-binding protein Machinery gene
  IS519_RS08700 (IS519_08700) qstR 1963989..1964636 (+) 648 WP_029405754.1 LuxR C-terminal-related transcriptional regulator Regulator
  IS519_RS08705 (IS519_08705) galU 1964794..1965666 (+) 873 WP_048609613.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  IS519_RS08710 (IS519_08710) uvrA 1965816..1968647 (+) 2832 WP_248638562.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25222.36 Da        Isoelectric Point: 9.2504

>NTDB_id=499931 IS519_RS08700 WP_029405754.1 1963989..1964636(+) (qstR) [Vibrio crassostreae strain ED395]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDELMLVDRKQSNRILLVDYREVPQLLIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGENWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=499931 IS519_RS08700 WP_029405754.1 1963989..1964636(+) (qstR) [Vibrio crassostreae strain ED395]
ATGAGAAAATCACGATACGCTCGCACTTTGCATTTTCTGTGCATCGACCCAAACGACACCTATCTACATGTAAAAGAGAT
AGAAAAGCACTTATCTATTATTCTCTACAAAATGACGCCCGACGAATTAATGCTAGTTGATAGAAAGCAAAGTAACCGGA
TCTTGCTCGTTGATTACAGAGAGGTGCCACAGCTACTGATTATTTGTCCTAACCTGACTGTTATGTGGAAAAATCACGAA
ATCATTTTATTCAATGTCCCCCAGCAACTTCCCACATCTGAGCTTCTTACCTATGGGGTACTAAAAGGGCTCTTTTATAA
CACCGAGCAAAAAGACAAGATTGCTCGTGGTCTTCAAGAAGTCATCGATGGTGAGAACTGGCTGCCAAGGAAGGTAACCA
ATCAACTGTTGTTTTATTATCGTAATATGGTCAATACCAACACGACACCAACCAACGTCGATTTAACCATTCGCGAGATT
CAGGTGATTCGCTGTCTTCAGTCAGGGTCATCAAACACACAAATCGCCGATGACTTGTTTATTAGTGAATTCACGGTTAA
ATCTCACCTTTATCAGATATTCCGTAAGTTGGCGGTCAAAAATAGGGTTCAAGCCATTGCATGGGCAAACCAGAATCTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5FWH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.023

100

0.53
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484