Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H9K48_RS01835 Genome accession   NZ_CP064033
Coordinates   389845..390375 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain DLM1805     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 384845..395375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K48_RS01825 (H9K48_01820) galU 387792..388664 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H9K48_RS01830 (H9K48_01825) qstR 388922..389566 (-) 645 WP_024701139.1 LuxR C-terminal-related transcriptional regulator Regulator
  H9K48_RS01835 (H9K48_01830) ssb 389845..390375 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  H9K48_RS01840 (H9K48_01835) csrD 390616..392625 (+) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  H9K48_RS01845 (H9K48_01840) - 392637..394082 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  H9K48_RS01850 (H9K48_01845) gspM 394079..394729 (+) 651 WP_029795428.1 type II secretion system protein GspM -
  H9K48_RS01855 (H9K48_01850) - 394722..395051 (+) 330 WP_005481006.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=498546 H9K48_RS01835 WP_005466625.1 389845..390375(+) (ssb) [Vibrio parahaemolyticus strain DLM1805]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=498546 H9K48_RS01835 WP_005466625.1 389845..390375(+) (ssb) [Vibrio parahaemolyticus strain DLM1805]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAACAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483