Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   H9K48_RS01830 Genome accession   NZ_CP064033
Coordinates   388922..389566 (-) Length   214 a.a.
NCBI ID   WP_024701139.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DLM1805     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 383922..394566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K48_RS01820 (H9K48_01815) uvrA 384832..387654 (-) 2823 WP_086585402.1 excinuclease ABC subunit UvrA -
  H9K48_RS01825 (H9K48_01820) galU 387792..388664 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  H9K48_RS01830 (H9K48_01825) qstR 388922..389566 (-) 645 WP_024701139.1 LuxR C-terminal-related transcriptional regulator Regulator
  H9K48_RS01835 (H9K48_01830) ssb 389845..390375 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  H9K48_RS01840 (H9K48_01835) csrD 390616..392625 (+) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  H9K48_RS01845 (H9K48_01840) - 392637..394082 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24360.17 Da        Isoelectric Point: 8.8082

>NTDB_id=498545 H9K48_RS01830 WP_024701139.1 388922..389566(-) (qstR) [Vibrio parahaemolyticus strain DLM1805]
MRKSAYARKLFLISMEDDAAQKVASLEKHIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=498545 H9K48_RS01830 WP_024701139.1 388922..389566(-) (qstR) [Vibrio parahaemolyticus strain DLM1805]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGCACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGTGAACTGCAA
GTGCTGCGTTGTCTGCAAGCAGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTCAAAAAGCTCTCGGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.093

100

0.523