Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ISN30_RS00875 Genome accession   NZ_CP064005
Coordinates   226266..227786 (+) Length   506 a.a.
NCBI ID   WP_003480498.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain XtKm7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 221266..232786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN30_RS00850 (ISN30_00850) speA 222174..224063 (-) 1890 WP_206709668.1 arginine decarboxylase -
  ISN30_RS00855 (ISN30_00855) speE 224307..225158 (+) 852 WP_003480505.1 polyamine aminopropyltransferase -
  ISN30_RS00860 (ISN30_00860) - 225468..225806 (-) 339 WP_003480503.1 P-II family nitrogen regulator -
  ISN30_RS00865 (ISN30_00865) - 225832..225984 (-) 153 WP_155616458.1 hypothetical protein -
  ISN30_RS00870 (ISN30_00870) - 225983..226252 (+) 270 WP_003480499.1 accessory factor UbiK family protein -
  ISN30_RS00875 (ISN30_00875) comM 226266..227786 (+) 1521 WP_003480498.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ISN30_RS00880 (ISN30_00880) - 227929..229026 (-) 1098 WP_003480496.1 lipocalin-like domain-containing protein -
  ISN30_RS00885 (ISN30_00885) - 229082..230170 (-) 1089 WP_229017781.1 lipocalin family protein -
  ISN30_RS00890 (ISN30_00890) - 230574..231407 (-) 834 WP_003480494.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53558.26 Da        Isoelectric Point: 8.5177

>NTDB_id=498501 ISN30_RS00875 WP_003480498.1 226266..227786(+) (comM) [Xanthomonas translucens pv. translucens strain XtKm7]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQACTARTL
LEVCALLNGTKTLPAAEALPTAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRVRVEQARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDA
IATAHLTEAIAYRHLDRGEAPLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=498501 ISN30_RS00875 WP_003480498.1 226266..227786(+) (comM) [Xanthomonas translucens pv. translucens strain XtKm7]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCCGAAGCGGCGGTGCGCGAATCGCGCGACCGGGTACGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATCACCGTCAATCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCAATCGCGCTGGGCATCCTCGCCGCCGCAGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGCGCCGTGGACGGGGTGCTGCCGGCGGCGCTGGCCGCCGCCCAAGCAGGAC
GCACGCTGATCGTGCCCGCCGGCAACGGCCCCGAAGCGGCGCTGGCGCAGCACGTGCAGGCGTGCACTGCGCGCACCCTG
CTCGAAGTCTGCGCGCTTTTGAACGGCACCAAGACCTTGCCCGCCGCCGAAGCCCTGCCGACCGCGGCCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAGGCCCAGGCGCGGCGCGCGCTGGAGATCGCGGCGGCCGGTCATCACCATCTGTTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCAGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCAGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTATCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGTACCCATCCGCGCCCCGGCGAAATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAATGGAACCGGCACGCCCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACCGTCTCGCGCGCAGCGCGCAGCGCCGAATTCCCGGCCCGCTTCCAGCTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTATCGCGCGCGCATCTCCG
GCCCGTTGCTGGACCGCATCGACCTGCATGTGGACGTACCGCGCCTGCCGCCGCAGGCATTGCGCGCCGATGCCGCTCCC
GGCGAAAGCAGCGCCGCCGTACGCGTGCGGGTGGAGCAGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAGGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCCCTGCACCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCGGCAGCGACGCG
ATCGCCACCGCGCATCTGACCGAGGCGATCGCGTACCGGCACCTGGACCGCGGCGAGGCACCATTGGCGCGCAGCGCCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.112

98.617

0.553
  comM Vibrio campbellii strain DS40M4

54.382

99.209

0.54
  comM Haemophilus influenzae Rd KW20

53.968

99.605

0.538
  comM Glaesserella parasuis strain SC1401

53.175

99.605

0.53
  comM Legionella pneumophila str. Paris

50.198

99.605

0.5
  comM Legionella pneumophila strain ERS1305867

50.198

99.605

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.447