Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ISN31_RS18015 Genome accession   NZ_CP064004
Coordinates   4129694..4131214 (-) Length   506 a.a.
NCBI ID   WP_060748382.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain XtKm8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4111524..4129551 4129694..4131214 flank 143


Gene organization within MGE regions


Location: 4111524..4131214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN31_RS17935 (ISN31_17920) aceA 4111524..4112801 (-) 1278 WP_060748389.1 isocitrate lyase -
  ISN31_RS17940 (ISN31_17925) metG 4112888..4114570 (-) 1683 WP_081088126.1 methionine--tRNA ligase -
  ISN31_RS17945 (ISN31_17930) - 4114933..4115943 (-) 1011 WP_196484328.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  ISN31_RS17950 - 4115952..4116233 (-) 282 WP_196484327.1 hypothetical protein -
  ISN31_RS17955 (ISN31_17935) - 4116472..4117227 (-) 756 WP_155646599.1 nucleotidyltransferase domain-containing protein -
  ISN31_RS17960 (ISN31_17940) - 4117251..4118693 (-) 1443 WP_206710861.1 MFS transporter -
  ISN31_RS17970 (ISN31_17950) - 4119481..4121010 (-) 1530 WP_196484324.1 pyridoxal-dependent decarboxylase -
  ISN31_RS17975 (ISN31_17955) - 4121138..4121887 (-) 750 WP_338402098.1 class I SAM-dependent methyltransferase -
  ISN31_RS17980 (ISN31_17960) - 4122081..4122854 (+) 774 Protein_3572 DDE-type integrase/transposase/recombinase -
  ISN31_RS17995 (ISN31_17975) - 4124663..4124977 (+) 315 Protein_3574 IS3 family transposase -
  ISN31_RS18000 (ISN31_17980) - 4126074..4126907 (+) 834 WP_060748383.1 alpha/beta hydrolase -
  ISN31_RS18005 (ISN31_17985) - 4127310..4128398 (+) 1089 WP_230950681.1 lipocalin family protein -
  ISN31_RS18010 (ISN31_17990) - 4128454..4129551 (+) 1098 WP_003480496.1 lipocalin-like domain-containing protein -
  ISN31_RS18015 (ISN31_17995) comM 4129694..4131214 (-) 1521 WP_060748382.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53620.33 Da        Isoelectric Point: 8.6023

>NTDB_id=498499 ISN31_RS18015 WP_060748382.1 4129694..4131214(-) (comM) [Xanthomonas translucens pv. translucens strain XtKm8]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQAFTARTM
LEVCALLNGTKTLPAAEALPTAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRVRVEQARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDA
IATAHLTEAIAYRHLDRGEAPLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=498499 ISN31_RS18015 WP_060748382.1 4129694..4131214(-) (comM) [Xanthomonas translucens pv. translucens strain XtKm8]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCTGAAGCGGCGGTGCGCGAATCGCGCGACCGGGTACGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATAACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCAATTGCGCTGGGCATCCTCGCCGCCGCAGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGCGCCGTGGACGGGGTGCTGCCGGCGGCGCTGGCCGCCGCCCAAGCCGGAC
GCACGCTGATCGTGCCCGCCGGCAACGGCCCCGAAGCGGCACTGGCGCAGCACGTGCAGGCGTTCACCGCGCGCACCATG
CTCGAAGTCTGCGCGCTGTTGAACGGCACCAAGACCTTGCCCGCCGCCGAAGCCCTGCCGACCGCGGCCACGCCGTTTCC
CGACCTGAGCGATGTGCGCGGGCAGGCCCAGGCGCGGCGCGCGCTGGAGATCGCGGCGGCCGGTCATCACCATCTGTTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCAGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCAGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTATCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGTACCCATCCGCGCCCCGGCGAAATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAATGGAACCGGCACGCCCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACCGTCTCGCGCGCAGCGCGCAGCGCCGAATTCCCGGCCCGCTTCCAGCTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTATCGCGCGCGCATCTCCG
GCCCGTTGCTGGACCGCATCGACCTGCATGTGGACGTACCGCGCCTGCCGCCGCAGGCATTGCGCGCCGATGCCGCTCCC
GGCGAAAGCAGCGCCGCCGTACGCGTGCGGGTGGAGCAGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAGGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCCCTGCACCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCGGCAGCGACGCG
ATCGCCACCGCGCATCTGACCGAGGCGATCGCGTACCGGCACCTGGACCGCGGCGAGGCACCATTGGCGCGCAGCGCCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.912

98.617

0.551
  comM Vibrio campbellii strain DS40M4

54.183

99.209

0.538
  comM Haemophilus influenzae Rd KW20

53.77

99.605

0.536
  comM Glaesserella parasuis strain SC1401

52.976

99.605

0.528
  comM Legionella pneumophila str. Paris

50.198

99.605

0.5
  comM Legionella pneumophila strain ERS1305867

50.198

99.605

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.447