Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IGI30_RS20140 Genome accession   NZ_CP075480
Coordinates   4187205..4187741 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain NT1N31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4182205..4192741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI30_RS20120 soxR 4183933..4184397 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  IGI30_RS20125 soxS 4184483..4184806 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  IGI30_RS20130 pdeC 4184809..4186395 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  IGI30_RS20135 yjcB 4186825..4187106 (+) 282 WP_001295689.1 YjcB family protein -
  IGI30_RS20140 ssb 4187205..4187741 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IGI30_RS20145 uvrA 4187995..4190817 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  IGI30_RS20150 yjbR 4190852..4191208 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  IGI30_RS20155 yjbQ 4191212..4191628 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IGI30_RS20160 aphA 4191739..4192452 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=498485 IGI30_RS20140 WP_000168305.1 4187205..4187741(-) (ssb) [Escherichia coli strain NT1N31]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=498485 IGI30_RS20140 WP_000168305.1 4187205..4187741(-) (ssb) [Escherichia coli strain NT1N31]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489