Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ISN34_RS00160 Genome accession   NZ_CP064001
Coordinates   36990..38510 (+) Length   506 a.a.
NCBI ID   WP_206710858.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain XtKm34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 31990..43510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN34_RS00140 (ISN34_00140) speA 32898..34787 (-) 1890 WP_206709668.1 arginine decarboxylase -
  ISN34_RS00145 (ISN34_00145) speE 35031..35882 (+) 852 WP_206710857.1 polyamine aminopropyltransferase -
  ISN34_RS00150 (ISN34_00150) - 36192..36530 (-) 339 WP_003480503.1 P-II family nitrogen regulator -
  ISN34_RS00155 (ISN34_00155) - 36707..36976 (+) 270 WP_009595755.1 accessory factor UbiK family protein -
  ISN34_RS00160 (ISN34_00160) comM 36990..38510 (+) 1521 WP_206710858.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ISN34_RS00165 (ISN34_00165) - 38668..39765 (-) 1098 WP_206710859.1 carotenoid 1,2-hydratase -
  ISN34_RS00170 (ISN34_00170) - 39822..40910 (-) 1089 WP_241753271.1 lipocalin-like domain-containing protein -
  ISN34_RS00175 (ISN34_00175) - 41313..42146 (-) 834 WP_060748383.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53492.20 Da        Isoelectric Point: 8.5162

>NTDB_id=498437 ISN34_RS00160 WP_206710858.1 36990..38510(+) (comM) [Xanthomonas translucens pv. translucens strain XtKm34]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQACTARTL
LEVCALLNGTKTLPAAEALPTAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRARVELARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDA
IATAHLTEAIGYRQLDRGEAPLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=498437 ISN34_RS00160 WP_206710858.1 36990..38510(+) (comM) [Xanthomonas translucens pv. translucens strain XtKm34]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCACCTCCGGTTCGGGTCGAAGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCCGAAGCGGCGGTGCGCGAATCGCGCGACCGGGTACGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGCGCCGTGGACGGAGTGCTGCCGGCGGCGCTGGCCGCCGCGCAAGCCGGGC
GCACGCTGATCGTGCCCGCCGGCAACGGCCCCGAAGCGGCGCTGGCGCAGCACGTGCAGGCGTGCACTGCGCGCACCCTG
CTCGAAGTCTGCGCGCTTTTGAACGGCACCAAGACCTTGCCCGCCGCCGAAGCCCTGCCGACCGCGGCCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAGGCCCAGGCGCGGCGCGCGCTGGAGATCGCGGCGGCCGGTCATCACCATCTGTTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTATCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGAGGCGGTACCCATCCGCGCCCCGGCGAAATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAATGGAACCGGCACGCCCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACCGTCTCGCGCGCAGCACGCAGCGCCGAATTCCCGGCCCGCTTCCAGTTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGACGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTATCGCGCGCGCATCTCCG
GTCCGTTGCTGGACCGCATCGACCTGCACGTGGACGTACCGCGACTGCCACCGCAGGCATTGCGCGCCGATGCCGCTCCC
GGCGAAAGCAGCGCCGCCGTGCGCGCCCGGGTGGAACTGGCACGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAACCGCGCGACGAAGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCGCTGCACCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCGGCAGCGACGCG
ATCGCCACCGCGCACCTGACCGAGGCGATCGGTTACCGGCAGCTGGACCGCGGTGAGGCACCATTGGCGCGCAGCGCCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.313

98.617

0.555
  comM Haemophilus influenzae Rd KW20

54.167

99.605

0.54
  comM Vibrio campbellii strain DS40M4

54.382

99.209

0.54
  comM Glaesserella parasuis strain SC1401

53.373

99.605

0.532
  comM Legionella pneumophila str. Paris

50.397

99.605

0.502
  comM Legionella pneumophila strain ERS1305867

50.397

99.605

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.447