Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KIH30_RS24120 Genome accession   NZ_CP075343
Coordinates   5279778..5281400 (+) Length   540 a.a.
NCBI ID   WP_268220838.1    Uniprot ID   -
Organism   Streptomyces sp. EMB24     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5274778..5286400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH30_RS24085 lepB 5274792..5275535 (+) 744 WP_268220836.1 signal peptidase I -
  KIH30_RS24090 lepB 5275528..5276628 (+) 1101 WP_268220837.1 signal peptidase I -
  KIH30_RS24095 lepB 5276516..5277484 (+) 969 WP_086703956.1 signal peptidase I -
  KIH30_RS24100 lepB 5277562..5278335 (+) 774 WP_199204980.1 signal peptidase I -
  KIH30_RS24105 - 5278325..5278852 (+) 528 WP_048459326.1 NUDIX hydrolase -
  KIH30_RS24110 - 5278906..5279214 (+) 309 WP_003993268.1 DUF2469 domain-containing protein -
  KIH30_RS24115 - 5279370..5279777 (+) 408 WP_086703957.1 YraN family protein -
  KIH30_RS24120 comM 5279778..5281400 (+) 1623 WP_268220838.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KIH30_RS24125 dprA 5281397..5282689 (+) 1293 WP_268220839.1 DNA-processing protein DprA -
  KIH30_RS24130 whiG 5282976..5283818 (+) 843 WP_048459323.1 RNA polymerase sigma factor WhiG -
  KIH30_RS24135 - 5283919..5284476 (+) 558 WP_121720633.1 TetR/AcrR family transcriptional regulator -
  KIH30_RS24140 - 5284503..5285099 (-) 597 WP_268221798.1 M23 family metallopeptidase -
  KIH30_RS24145 rpsB 5285482..5286396 (+) 915 WP_122213720.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 56339.38 Da        Isoelectric Point: 6.4355

>NTDB_id=497696 KIH30_RS24120 WP_268220838.1 5279778..5281400(+) (comM) [Streptomyces sp. EMB24]
MGFARTCSVTLVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKGGSG
FDIAVACAVLGASERIDPRVLSDIVMIGELGLDGRVRPVRGILPAVLAAADAGFEQVVVPECAAAEAALVPGVSVLGVRS
LRQLVAVLTDEPVPDEEPQEPDRPDPLMAGLRDLGGGAVTGTRGGPGGYDQGHDLADVVGQHTARTAVEVAAAGGHHLFL
EGPPGAGKTMLAERMPSVLPPLDREASLEVTAVHSVAGLLPPGRPLIDTAPYCAPHHSATMQALVGGGPGTARPGAVSLS
HRGVLFLDETPEFSSKALDALRQPLEAGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSRADDRCECPPSAIRRYQARL
SGPLLDRVDLRVEVDAVTRRELSAVGARGETTTVVADRVRSARERAAARFHGTPWRLNSEIPGRELRSRWQAAPGAMDEA
ERSLERGVLTARGIDRVLRVAWTVADLSGHDRPDAGDVALALQLRTGVPRGVPMAIGAGV

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=497696 KIH30_RS24120 WP_268220838.1 5279778..5281400(+) (comM) [Streptomyces sp. EMB24]
ATGGGATTCGCCCGTACGTGTTCGGTGACGCTCGTCGGCGTCGAGGGCGTGGTCGTCGAGGTGCAGGCCGACCTGGAGCC
GGGAGTCGCCGCGTTCACGCTGGTGGGGCTGCCGGACAAGAGCCTGACGGAGAGCCGCGACCGGGTCAGGGCCGCCGTGG
TCAACTCCGGCGGCGAGTGGCCGCAGAAGAAGCTCACCGTGGGACTGAGCCCGGCGTCGGTTCCGAAGGGCGGCAGCGGG
TTCGATATCGCCGTGGCCTGCGCCGTCCTCGGCGCCTCGGAGCGGATCGACCCCCGGGTCCTGTCCGACATCGTGATGAT
CGGCGAGCTGGGCCTTGACGGCCGGGTGCGGCCGGTGCGCGGCATCCTGCCGGCGGTGCTGGCCGCGGCGGACGCCGGCT
TCGAGCAGGTCGTGGTGCCGGAGTGCGCCGCCGCCGAGGCCGCCCTGGTGCCGGGTGTGTCCGTGCTGGGCGTGCGCAGC
CTGCGTCAGCTCGTCGCGGTCCTCACCGACGAGCCGGTGCCCGACGAGGAGCCCCAGGAGCCGGACCGGCCCGATCCGTT
GATGGCGGGGCTGCGCGACCTCGGCGGCGGAGCGGTCACCGGCACGAGGGGCGGTCCCGGCGGGTACGACCAGGGCCACG
ACCTCGCCGACGTCGTGGGCCAGCACACGGCGCGCACGGCCGTCGAGGTGGCCGCAGCGGGCGGTCACCACCTCTTCCTC
GAGGGCCCGCCCGGCGCGGGCAAGACGATGCTCGCCGAGCGCATGCCGTCCGTCCTGCCCCCGCTGGACCGCGAGGCGTC
CCTGGAGGTGACCGCCGTGCACTCGGTGGCGGGCCTGCTGCCGCCGGGCCGCCCCCTGATCGACACCGCGCCCTACTGCG
CCCCGCACCACTCGGCCACCATGCAGGCCCTCGTGGGCGGCGGCCCGGGGACGGCCCGGCCGGGAGCGGTGTCCCTGTCC
CACCGAGGTGTTCTGTTTCTGGACGAGACCCCCGAGTTCAGCAGCAAGGCGCTGGACGCCCTGCGCCAGCCGCTGGAGGC
GGGGCACGTGGTCATCGCGCGCAGCGCGGGCGTCGTGCGCTTCCCGGCACGCTTTCTCATGGTGCTCGCGGCCAATCCGT
GCCCGTGCGGCCGGTTCTCGCGTGCGGACGACCGGTGCGAGTGCCCGCCCTCGGCGATCCGCCGCTACCAGGCCCGGCTC
TCCGGGCCGCTGCTCGACCGGGTCGACCTGCGGGTCGAGGTGGACGCCGTCACCCGGCGCGAGCTGAGTGCGGTCGGAGC
CCGGGGCGAGACCACCACCGTGGTCGCGGACCGGGTGCGCTCGGCCCGCGAACGGGCCGCCGCGCGGTTCCACGGCACTC
CGTGGCGCCTCAACAGCGAGATCCCGGGCCGGGAGCTCCGCAGCCGCTGGCAGGCCGCGCCGGGCGCCATGGACGAGGCC
GAACGGAGCCTGGAGCGGGGCGTGCTGACCGCGCGGGGGATCGACCGTGTGCTGCGGGTCGCCTGGACGGTCGCCGACCT
GTCCGGCCACGACCGCCCCGACGCCGGCGATGTCGCACTCGCGCTGCAGCTGCGGACAGGCGTGCCGCGCGGGGTGCCGA
TGGCGATCGGGGCGGGGGTATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-421)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(429-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

40

97.222

0.389
  comM Acinetobacter baylyi ADP1

39.163

97.407

0.381
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.275

94.259

0.38
  comM Vibrio cholerae strain A1552

40.275

94.259

0.38
  comM Legionella pneumophila str. Paris

37.476

98.333

0.369
  comM Legionella pneumophila strain ERS1305867

37.476

98.333

0.369
  comM Haemophilus influenzae Rd KW20

37.1

98.333

0.365
  comM Glaesserella parasuis strain SC1401

36.862

97.963

0.361