Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SSUD9_RS06820 Genome accession   NC_017620
Coordinates   1390979..1391920 (-) Length   313 a.a.
NCBI ID   WP_002938107.1    Uniprot ID   A0A142UMZ0
Organism   Streptococcus suis D9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1385979..1396920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS06795 (SSUD9_1398) prsA 1386083..1387084 (-) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -
  SSUD9_RS06800 (SSUD9_1399) - 1387145..1387864 (-) 720 WP_009910106.1 O-methyltransferase -
  SSUD9_RS06805 (SSUD9_1400) - 1387939..1388487 (-) 549 WP_002938103.1 DUF6630 family protein -
  SSUD9_RS06810 (SSUD9_1401) - 1388503..1388943 (-) 441 WP_002938105.1 hypothetical protein -
  SSUD9_RS06815 (SSUD9_1402) pepF 1388945..1390747 (-) 1803 WP_009910108.1 oligoendopeptidase F Regulator
  SSUD9_RS06820 (SSUD9_1403) coiA 1390979..1391920 (-) 942 WP_002938107.1 competence protein CoiA Machinery gene
  SSUD9_RS06825 (SSUD9_1404) metG 1391984..1393987 (-) 2004 WP_014637049.1 methionine--tRNA ligase -
  SSUD9_RS06830 (SSUD9_1405) - 1394141..1394734 (+) 594 WP_002938116.1 DUF1361 domain-containing protein -
  SSUD9_RS06835 (SSUD9_1407) - 1395035..1396072 (+) 1038 WP_002938119.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36361.92 Da        Isoelectric Point: 7.9421

>NTDB_id=49744 SSUD9_RS06820 WP_002938107.1 1390979..1391920(-) (coiA) [Streptococcus suis D9]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTFPLDRDLPRYIAQQLYYRSPNWL
TLQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=49744 SSUD9_RS06820 WP_002938107.1 1390979..1391920(-) (coiA) [Streptococcus suis D9]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGGCTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCATTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTTCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAGATCCCCCAATTGGTTA
ACCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTACCCACATATCCGTCT
ACCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCTTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UMZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

50.962

99.681

0.508
  coiA Streptococcus pneumoniae Rx1

50.962

99.681

0.508
  coiA Streptococcus pneumoniae D39

50.962

99.681

0.508
  coiA Streptococcus pneumoniae R6

50.962

99.681

0.508
  coiA Lactococcus lactis subsp. cremoris KW2

41.562

100

0.425

Multiple sequence alignment