Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SSUD9_RS06815 Genome accession   NC_017620
Coordinates   1388945..1390747 (-) Length   600 a.a.
NCBI ID   WP_009910108.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1383945..1395747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS06790 (SSUD9_1397) - 1385333..1385818 (-) 486 WP_002938099.1 LURP-one-related/scramblase family protein -
  SSUD9_RS06795 (SSUD9_1398) prsA 1386083..1387084 (-) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -
  SSUD9_RS06800 (SSUD9_1399) - 1387145..1387864 (-) 720 WP_009910106.1 O-methyltransferase -
  SSUD9_RS06805 (SSUD9_1400) - 1387939..1388487 (-) 549 WP_002938103.1 DUF6630 family protein -
  SSUD9_RS06810 (SSUD9_1401) - 1388503..1388943 (-) 441 WP_002938105.1 hypothetical protein -
  SSUD9_RS06815 (SSUD9_1402) pepF 1388945..1390747 (-) 1803 WP_009910108.1 oligoendopeptidase F Regulator
  SSUD9_RS06820 (SSUD9_1403) coiA 1390979..1391920 (-) 942 WP_002938107.1 competence protein CoiA Machinery gene
  SSUD9_RS06825 (SSUD9_1404) metG 1391984..1393987 (-) 2004 WP_014637049.1 methionine--tRNA ligase -
  SSUD9_RS06830 (SSUD9_1405) - 1394141..1394734 (+) 594 WP_002938116.1 DUF1361 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69190.34 Da        Isoelectric Point: 4.5534

>NTDB_id=49743 SSUD9_RS06815 WP_009910108.1 1388945..1390747(-) (pepF) [Streptococcus suis D9]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLSLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=49743 SSUD9_RS06815 WP_009910108.1 1388945..1390747(-) (pepF) [Streptococcus suis D9]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACTACTATTTTCCCAACCGATGATGCCTGGGA
AGCAGAACTTGCGGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTACTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTTAGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTCTGGCAGCCAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAAGTCAAT
AACCTGAAAGCTCGTTTACGGAAGTATGACTCAGCTCGCCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTAGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTATGAAGATGCACTCAAG
AAATGCCAAGAAACCTTAGAAATCTTTGGTGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAATCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAATTTGGATAACATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTCCTAACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTTAACCATTACCTAGATGGTTTCCGTGGCACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAAGCTATCTACAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAACGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCTGCATCAGCTCTTGCAA
ACAAGATTGTCAACGGCAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCTAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAACGACGCCTTTAAGGTTTTTGAGGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698

Multiple sequence alignment