Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   KIP81_RS02650 Genome accession   NZ_CP075172
Coordinates   505245..505910 (+) Length   221 a.a.
NCBI ID   WP_243603113.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500245..510910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS02625 (KIP81_02635) - 500409..501809 (+) 1401 WP_243603110.1 Cof-type HAD-IIB family hydrolase -
  KIP81_RS02630 (KIP81_02640) - 501809..502165 (+) 357 WP_027968108.1 S1 RNA-binding domain-containing protein -
  KIP81_RS02635 (KIP81_02645) cysK 502239..503168 (-) 930 WP_243603111.1 cysteine synthase A -
  KIP81_RS02640 (KIP81_02650) - 503266..503892 (-) 627 WP_074480884.1 YigZ family protein -
  KIP81_RS02645 (KIP81_02655) comFA/cflA 503947..505245 (+) 1299 WP_243603112.1 DEAD/DEAH box helicase Machinery gene
  KIP81_RS02650 (KIP81_02660) comFC/cflB 505245..505910 (+) 666 WP_243603113.1 ComF family protein Machinery gene
  KIP81_RS02655 (KIP81_02665) raiA 505987..506535 (+) 549 WP_024344660.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25275.39 Da        Isoelectric Point: 9.4541

>NTDB_id=497384 KIP81_RS02650 WP_243603113.1 505245..505910(+) (comFC/cflB) [Streptococcus equinus strain SheepZ001]
MEKCLLCDQLFLEKETFLGIISIQKNQRNICPDCLAAFEKIGDKHCPTCYRNGCETQCKDCQKWEKEGHSVKHQAIFTYN
AAMKNYFSKYKFQGDVALGAIFSRELKKKIKLYKNYSIVPVPLSKERMTERKFNQVAALLDASGIAYQEILSKKNIAKQS
DKNRKERLGSQCPFQVMPNSNIPKNILIIDDIYTTGATLKGIYHLLYENGAQNVKSLTIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=497384 KIP81_RS02650 WP_243603113.1 505245..505910(+) (comFC/cflB) [Streptococcus equinus strain SheepZ001]
ATGGAAAAGTGCTTGTTATGTGACCAATTATTTCTTGAAAAAGAAACTTTTTTGGGTATCATTTCTATTCAAAAAAATCA
AAGAAATATTTGTCCTGATTGTCTCGCTGCTTTTGAAAAAATAGGAGATAAGCACTGCCCAACTTGTTATCGAAATGGTT
GTGAAACGCAGTGTAAAGATTGTCAAAAATGGGAAAAGGAAGGGCATTCTGTCAAGCATCAGGCAATTTTTACCTATAAT
GCTGCCATGAAAAATTATTTTTCAAAGTACAAATTTCAAGGAGACGTAGCACTCGGTGCAATTTTTTCTAGAGAGCTTAA
GAAAAAAATAAAGCTGTACAAAAATTACAGTATCGTGCCAGTCCCTTTAAGTAAAGAGCGAATGACAGAACGTAAATTTA
ATCAAGTTGCTGCCTTATTGGACGCTTCTGGAATAGCCTATCAAGAGATTTTATCAAAGAAAAATATCGCTAAACAATCA
GATAAAAACAGAAAAGAGAGACTTGGGAGCCAGTGTCCATTTCAAGTTATGCCAAATAGTAATATTCCTAAAAATATTTT
AATCATTGACGACATTTATACGACTGGCGCTACACTAAAAGGCATCTATCATCTTCTTTATGAAAACGGTGCACAGAATG
TAAAAAGTTTAACAATTGCACGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

47.032

99.095

0.466
  comFC/cflB Streptococcus pneumoniae Rx1

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae D39

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae R6

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae TIGR4

46.119

99.095

0.457
  comFC/cflB Streptococcus mitis NCTC 12261

45.205

99.095

0.448
  comFC Bacillus subtilis subsp. subtilis str. 168

35.683

100

0.367