Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   SSUD9_RS00825 Genome accession   NC_017620
Coordinates   128407..128700 (+) Length   97 a.a.
NCBI ID   WP_002936548.1    Uniprot ID   A0AAJ2PIZ8
Organism   Streptococcus suis D9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 123407..133700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS00795 (SSUD9_0133) - 124429..124794 (+) 366 WP_002936568.1 DUF1033 family protein -
  SSUD9_RS00800 (SSUD9_0134) - 124829..125779 (-) 951 WP_014636751.1 S66 family peptidase -
  SSUD9_RS00805 (SSUD9_0135) comYA 125865..126815 (+) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  SSUD9_RS00810 (SSUD9_0136) comYB 126727..127764 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  SSUD9_RS00815 (SSUD9_0137) comYC 127766..128047 (+) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  SSUD9_RS00820 (SSUD9_0138) comGD 128028..128435 (+) 408 WP_014636753.1 competence type IV pilus minor pilin ComGD -
  SSUD9_RS00825 (SSUD9_0139) comYE 128407..128700 (+) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  SSUD9_RS00830 (SSUD9_0140) comGF/cglF 128687..129121 (+) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  SSUD9_RS00835 (SSUD9_0141) comGG 129099..129509 (+) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  SSUD9_RS00840 (SSUD9_0142) comYH 129566..130519 (+) 954 WP_014636755.1 class I SAM-dependent methyltransferase Machinery gene
  SSUD9_RS00845 (SSUD9_0143) - 130569..131756 (+) 1188 WP_002936543.1 acetate kinase -
  SSUD9_RS00850 (SSUD9_0144) - 132071..132622 (+) 552 WP_014636756.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10746.66 Da        Isoelectric Point: 10.2088

>NTDB_id=49720 SSUD9_RS00825 WP_002936548.1 128407..128700(+) (comYE) [Streptococcus suis D9]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTGQDNLALNGVTVQVQRTAD
KIIVFREGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=49720 SSUD9_RS00825 WP_002936548.1 128407..128700(+) (comYE) [Streptococcus suis D9]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTGGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACTAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGGGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCGGAT
AAGATCATTGTTTTCCGCGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371

Multiple sequence alignment